gene detail

Gene description

TAIR ID: AT1G52230

Short description: photosystem I subunit H2

Pathogen responsiveness: 0.15

General responsiveness: 3.52

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G451224

Wheat: No orthologous gene

GO biological process

response to cytokinin, photosynthesis

GO cellular component

chloroplast thylakoid membrane, membrane, plastoglobule, chloroplast, thylakoid, photosystem I reaction center, chloroplast thylakoid, integral component of membrane

GO molecular function

molecular_function

Protein domain

Pfam	PF03244, Photosystem I reaction centre subunit VI

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath00195: Photosynthesis

Transcriptional regulation

Regulator:
AT3G24050, AT4G34680, AT5G11260, AT2G45050, AT3G60530

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 4

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

21 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, Flg22 2 h	-1.69	6.90E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.60	4.08E-07
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	-1.91	3.12E-12
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	-2.03	6.71E-13
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-2.73	1.44E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-4.56	1.31E-14
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.55	6.31E-08
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-3.16	1.67E-12
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-3.28	1.80E-06
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-3.11	1.21E-07
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.72	1.72E-12
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-2.70	5.39E-12
GSE56094	Col, WT, control 11 h	Col, WT, hrpA- 11 h	-1.82	2.65E-06
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-2.40	3.61E-10
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-2.54	3.28E-11
GSE56094	Col, WT, control 6 h	Col, WT, PstDC3000 6 h	-1.54	9.57E-05
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	-1.88	6.30E-07
GSE56094	Col, WT, control 8 h	Col, WT, hrpA- 8 h	-1.60	3.72E-05
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	-2.28	3.88E-09
GSE56094	Col, WT, control 9 h	Col, WT, hrpA- 9 h	-1.73	1.11E-05
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.66	1.09E-05