co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G52230

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
2	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
3	GO:0006223: uracil salvage	0.00E+00
4	GO:0042821: pyridoxal biosynthetic process	0.00E+00
5	GO:0005996: monosaccharide metabolic process	0.00E+00
6	GO:0016553: base conversion or substitution editing	0.00E+00
7	GO:0042820: vitamin B6 catabolic process	0.00E+00
8	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
9	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
10	GO:0006399: tRNA metabolic process	0.00E+00
11	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
12	GO:0015979: photosynthesis	5.09E-28
13	GO:0015995: chlorophyll biosynthetic process	7.03E-16
14	GO:0009773: photosynthetic electron transport in photosystem I	8.85E-11
15	GO:0042254: ribosome biogenesis	3.01E-10
16	GO:0006412: translation	4.81E-09
17	GO:0010207: photosystem II assembly	3.09E-08
18	GO:0010196: nonphotochemical quenching	4.74E-08
19	GO:0009765: photosynthesis, light harvesting	4.33E-07
20	GO:0009735: response to cytokinin	8.68E-07
21	GO:0009658: chloroplast organization	1.14E-06
22	GO:0010027: thylakoid membrane organization	2.94E-06
23	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.15E-06
24	GO:0018298: protein-chromophore linkage	5.92E-06
25	GO:0032544: plastid translation	1.16E-05
26	GO:0090391: granum assembly	1.48E-05
27	GO:2000122: negative regulation of stomatal complex development	5.93E-05
28	GO:0006546: glycine catabolic process	5.93E-05
29	GO:0010037: response to carbon dioxide	5.93E-05
30	GO:0015976: carbon utilization	5.93E-05
31	GO:0019464: glycine decarboxylation via glycine cleavage system	5.93E-05
32	GO:0009409: response to cold	7.84E-05
33	GO:0042742: defense response to bacterium	1.26E-04
34	GO:0009768: photosynthesis, light harvesting in photosystem I	1.29E-04
35	GO:0055114: oxidation-reduction process	1.35E-04
36	GO:0010114: response to red light	2.29E-04
37	GO:0009772: photosynthetic electron transport in photosystem II	2.42E-04
38	GO:0000413: protein peptidyl-prolyl isomerization	2.68E-04
39	GO:0009443: pyridoxal 5'-phosphate salvage	3.02E-04
40	GO:0043489: RNA stabilization	3.02E-04
41	GO:0071277: cellular response to calcium ion	3.02E-04
42	GO:1902458: positive regulation of stomatal opening	3.02E-04
43	GO:0034337: RNA folding	3.02E-04
44	GO:0071588: hydrogen peroxide mediated signaling pathway	3.02E-04
45	GO:0009657: plastid organization	3.75E-04
46	GO:0010206: photosystem II repair	4.52E-04
47	GO:0006783: heme biosynthetic process	4.52E-04
48	GO:0006782: protoporphyrinogen IX biosynthetic process	6.23E-04
49	GO:1903426: regulation of reactive oxygen species biosynthetic process	6.60E-04
50	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.60E-04
51	GO:0018119: peptidyl-cysteine S-nitrosylation	7.19E-04
52	GO:0019253: reductive pentose-phosphate cycle	1.04E-03
53	GO:0006000: fructose metabolic process	1.07E-03
54	GO:0009637: response to blue light	1.18E-03
55	GO:0034599: cellular response to oxidative stress	1.25E-03
56	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.53E-03
57	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.53E-03
58	GO:0010731: protein glutathionylation	1.53E-03
59	GO:0055070: copper ion homeostasis	1.53E-03
60	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.53E-03
61	GO:2001141: regulation of RNA biosynthetic process	1.53E-03
62	GO:0051513: regulation of monopolar cell growth	1.53E-03
63	GO:0071484: cellular response to light intensity	1.53E-03
64	GO:0045727: positive regulation of translation	2.06E-03
65	GO:0015994: chlorophyll metabolic process	2.06E-03
66	GO:0044206: UMP salvage	2.06E-03
67	GO:0006021: inositol biosynthetic process	2.06E-03
68	GO:0034052: positive regulation of plant-type hypersensitive response	2.63E-03
69	GO:0016120: carotene biosynthetic process	2.63E-03
70	GO:0043097: pyrimidine nucleoside salvage	2.63E-03
71	GO:0032543: mitochondrial translation	2.63E-03
72	GO:0045038: protein import into chloroplast thylakoid membrane	2.63E-03
73	GO:0031365: N-terminal protein amino acid modification	2.63E-03
74	GO:0016123: xanthophyll biosynthetic process	2.63E-03
75	GO:0042335: cuticle development	2.64E-03
76	GO:0015986: ATP synthesis coupled proton transport	3.05E-03
77	GO:0006206: pyrimidine nucleobase metabolic process	3.24E-03
78	GO:0032973: amino acid export	3.24E-03
79	GO:0010190: cytochrome b6f complex assembly	3.24E-03
80	GO:0046855: inositol phosphate dephosphorylation	3.24E-03
81	GO:0042549: photosystem II stabilization	3.24E-03
82	GO:0000302: response to reactive oxygen species	3.50E-03
83	GO:0032502: developmental process	3.74E-03
84	GO:1901259: chloroplast rRNA processing	3.90E-03
85	GO:0017148: negative regulation of translation	3.90E-03
86	GO:0010189: vitamin E biosynthetic process	3.90E-03
87	GO:0009854: oxidative photosynthetic carbon pathway	3.90E-03
88	GO:0010019: chloroplast-nucleus signaling pathway	3.90E-03
89	GO:0010555: response to mannitol	3.90E-03
90	GO:0071470: cellular response to osmotic stress	3.90E-03
91	GO:0080167: response to karrikin	3.98E-03
92	GO:0009769: photosynthesis, light harvesting in photosystem II	4.60E-03
93	GO:0009645: response to low light intensity stimulus	4.60E-03
94	GO:0006400: tRNA modification	4.60E-03
95	GO:0043090: amino acid import	4.60E-03
96	GO:0045454: cell redox homeostasis	5.24E-03
97	GO:0009819: drought recovery	5.35E-03
98	GO:0009642: response to light intensity	5.35E-03
99	GO:0042255: ribosome assembly	5.35E-03
100	GO:0006353: DNA-templated transcription, termination	5.35E-03
101	GO:0043068: positive regulation of programmed cell death	5.35E-03
102	GO:0009704: de-etiolation	5.35E-03
103	GO:2000070: regulation of response to water deprivation	5.35E-03
104	GO:0048564: photosystem I assembly	5.35E-03
105	GO:0009627: systemic acquired resistance	5.66E-03
106	GO:0007186: G-protein coupled receptor signaling pathway	6.13E-03
107	GO:0017004: cytochrome complex assembly	6.13E-03
108	GO:0006002: fructose 6-phosphate metabolic process	6.13E-03
109	GO:0071482: cellular response to light stimulus	6.13E-03
110	GO:0015996: chlorophyll catabolic process	6.13E-03
111	GO:0009817: defense response to fungus, incompatible interaction	6.61E-03
112	GO:0009245: lipid A biosynthetic process	6.95E-03
113	GO:0080144: amino acid homeostasis	6.95E-03
114	GO:0090333: regulation of stomatal closure	6.95E-03
115	GO:0006754: ATP biosynthetic process	6.95E-03
116	GO:0000373: Group II intron splicing	6.95E-03
117	GO:0010218: response to far red light	7.29E-03
118	GO:0010119: regulation of stomatal movement	7.65E-03
119	GO:0009631: cold acclimation	7.65E-03
120	GO:0006779: porphyrin-containing compound biosynthetic process	7.80E-03
121	GO:0009853: photorespiration	8.39E-03
122	GO:0006949: syncytium formation	8.70E-03
123	GO:0019684: photosynthesis, light reaction	9.63E-03
124	GO:0009089: lysine biosynthetic process via diaminopimelate	9.63E-03
125	GO:0006352: DNA-templated transcription, initiation	9.63E-03
126	GO:0000272: polysaccharide catabolic process	9.63E-03
127	GO:0010015: root morphogenesis	9.63E-03
128	GO:0045037: protein import into chloroplast stroma	1.06E-02
129	GO:0006790: sulfur compound metabolic process	1.06E-02
130	GO:0010628: positive regulation of gene expression	1.16E-02
131	GO:0006006: glucose metabolic process	1.16E-02
132	GO:0009725: response to hormone	1.16E-02
133	GO:0006094: gluconeogenesis	1.16E-02
134	GO:0005986: sucrose biosynthetic process	1.16E-02
135	GO:0010020: chloroplast fission	1.26E-02
136	GO:0010167: response to nitrate	1.37E-02
137	GO:0046688: response to copper ion	1.37E-02
138	GO:0019853: L-ascorbic acid biosynthetic process	1.37E-02
139	GO:0046854: phosphatidylinositol phosphorylation	1.37E-02
140	GO:0006636: unsaturated fatty acid biosynthetic process	1.48E-02
141	GO:0000027: ribosomal large subunit assembly	1.59E-02
142	GO:0019344: cysteine biosynthetic process	1.59E-02
143	GO:0009116: nucleoside metabolic process	1.59E-02
144	GO:0006417: regulation of translation	1.62E-02
145	GO:0009416: response to light stimulus	1.72E-02
146	GO:0061077: chaperone-mediated protein folding	1.82E-02
147	GO:0009269: response to desiccation	1.82E-02
148	GO:0048511: rhythmic process	1.82E-02
149	GO:0009814: defense response, incompatible interaction	1.95E-02
150	GO:0016226: iron-sulfur cluster assembly	1.95E-02
151	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.07E-02
152	GO:0009411: response to UV	2.07E-02
153	GO:0006012: galactose metabolic process	2.07E-02
154	GO:0006396: RNA processing	2.15E-02
155	GO:0016117: carotenoid biosynthetic process	2.33E-02
156	GO:0006869: lipid transport	2.42E-02
157	GO:0042631: cellular response to water deprivation	2.46E-02
158	GO:0010182: sugar mediated signaling pathway	2.59E-02
159	GO:0042752: regulation of circadian rhythm	2.73E-02
160	GO:0019252: starch biosynthetic process	2.87E-02
161	GO:0006397: mRNA processing	2.96E-02
162	GO:0042744: hydrogen peroxide catabolic process	2.98E-02
163	GO:0006633: fatty acid biosynthetic process	3.28E-02
164	GO:0009828: plant-type cell wall loosening	3.46E-02
165	GO:0042128: nitrate assimilation	4.24E-02
166	GO:0010411: xyloglucan metabolic process	4.40E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
3	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
4	GO:0008887: glycerate kinase activity	0.00E+00
5	GO:0045550: geranylgeranyl reductase activity	0.00E+00
6	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
7	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
8	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
9	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
10	GO:0046408: chlorophyll synthetase activity	0.00E+00
11	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
12	GO:0051738: xanthophyll binding	0.00E+00
13	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
14	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
15	GO:0019843: rRNA binding	4.08E-15
16	GO:0003735: structural constituent of ribosome	1.26E-12
17	GO:0016168: chlorophyll binding	3.16E-09
18	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.85E-08
19	GO:0051920: peroxiredoxin activity	3.29E-06
20	GO:0005528: FK506 binding	4.04E-06
21	GO:0016209: antioxidant activity	8.02E-06
22	GO:0004375: glycine dehydrogenase (decarboxylating) activity	3.30E-05
23	GO:0016851: magnesium chelatase activity	3.30E-05
24	GO:0043495: protein anchor	5.93E-05
25	GO:0003959: NADPH dehydrogenase activity	9.36E-05
26	GO:0031409: pigment binding	9.50E-05
27	GO:0004130: cytochrome-c peroxidase activity	1.36E-04
28	GO:0022891: substrate-specific transmembrane transporter activity	1.91E-04
29	GO:0019899: enzyme binding	2.42E-04
30	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	3.02E-04
31	GO:0004853: uroporphyrinogen decarboxylase activity	3.02E-04
32	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.02E-04
33	GO:0005509: calcium ion binding	3.99E-04
34	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.60E-04
35	GO:0008934: inositol monophosphate 1-phosphatase activity	6.60E-04
36	GO:0052833: inositol monophosphate 4-phosphatase activity	6.60E-04
37	GO:0016630: protochlorophyllide reductase activity	6.60E-04
38	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	6.60E-04
39	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	6.60E-04
40	GO:0008967: phosphoglycolate phosphatase activity	6.60E-04
41	GO:0008883: glutamyl-tRNA reductase activity	6.60E-04
42	GO:0047746: chlorophyllase activity	6.60E-04
43	GO:0042389: omega-3 fatty acid desaturase activity	6.60E-04
44	GO:0010297: heteropolysaccharide binding	6.60E-04
45	GO:0004047: aminomethyltransferase activity	6.60E-04
46	GO:0052832: inositol monophosphate 3-phosphatase activity	6.60E-04
47	GO:0004089: carbonate dehydratase activity	9.29E-04
48	GO:0008266: poly(U) RNA binding	1.04E-03
49	GO:0004148: dihydrolipoyl dehydrogenase activity	1.07E-03
50	GO:0004751: ribose-5-phosphate isomerase activity	1.07E-03
51	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.07E-03
52	GO:0070402: NADPH binding	1.07E-03
53	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.07E-03
54	GO:0004324: ferredoxin-NADP+ reductase activity	1.07E-03
55	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.07E-03
56	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.53E-03
57	GO:0016987: sigma factor activity	2.06E-03
58	GO:1990137: plant seed peroxidase activity	2.06E-03
59	GO:0004659: prenyltransferase activity	2.06E-03
60	GO:0001053: plastid sigma factor activity	2.06E-03
61	GO:0004845: uracil phosphoribosyltransferase activity	2.06E-03
62	GO:0003727: single-stranded RNA binding	2.25E-03
63	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.84E-03
64	GO:0004601: peroxidase activity	2.87E-03
65	GO:0031177: phosphopantetheine binding	3.24E-03
66	GO:0042578: phosphoric ester hydrolase activity	3.24E-03
67	GO:0016688: L-ascorbate peroxidase activity	3.24E-03
68	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.90E-03
69	GO:0004849: uridine kinase activity	3.90E-03
70	GO:0000035: acyl binding	3.90E-03
71	GO:0008235: metalloexopeptidase activity	4.60E-03
72	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	5.35E-03
73	GO:0004034: aldose 1-epimerase activity	5.35E-03
74	GO:0004033: aldo-keto reductase (NADP) activity	5.35E-03
75	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	6.13E-03
76	GO:0030234: enzyme regulator activity	8.70E-03
77	GO:0051539: 4 iron, 4 sulfur cluster binding	9.56E-03
78	GO:0050661: NADP binding	9.56E-03
79	GO:0004177: aminopeptidase activity	9.63E-03
80	GO:0042802: identical protein binding	1.02E-02
81	GO:0031072: heat shock protein binding	1.16E-02
82	GO:0051537: 2 iron, 2 sulfur cluster binding	1.17E-02
83	GO:0008289: lipid binding	1.19E-02
84	GO:0003690: double-stranded DNA binding	1.52E-02
85	GO:0051536: iron-sulfur cluster binding	1.59E-02
86	GO:0043424: protein histidine kinase binding	1.71E-02
87	GO:0004650: polygalacturonase activity	1.91E-02
88	GO:0003756: protein disulfide isomerase activity	2.20E-02
89	GO:0016491: oxidoreductase activity	2.62E-02
90	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.69E-02
91	GO:0050662: coenzyme binding	2.73E-02
92	GO:0016853: isomerase activity	2.73E-02
93	GO:0004872: receptor activity	2.87E-02
94	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.01E-02
95	GO:0009055: electron carrier activity	3.06E-02
96	GO:0008483: transaminase activity	3.61E-02
97	GO:0008237: metallopeptidase activity	3.61E-02
98	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.40E-02

Rank	GO Term	Adjusted P value
1	GO:0009575: chromoplast stroma	0.00E+00
2	GO:0044391: ribosomal subunit	0.00E+00
3	GO:0009515: granal stacked thylakoid	0.00E+00
4	GO:0009507: chloroplast	1.39E-89
5	GO:0009535: chloroplast thylakoid membrane	1.09E-70
6	GO:0009579: thylakoid	2.60E-52
7	GO:0009534: chloroplast thylakoid	1.65E-50
8	GO:0009941: chloroplast envelope	2.39E-49
9	GO:0009570: chloroplast stroma	2.47E-44
10	GO:0009543: chloroplast thylakoid lumen	3.88E-34
11	GO:0031977: thylakoid lumen	1.99E-27
12	GO:0005840: ribosome	1.67E-17
13	GO:0009654: photosystem II oxygen evolving complex	2.30E-11
14	GO:0030095: chloroplast photosystem II	3.79E-10
15	GO:0019898: extrinsic component of membrane	4.60E-10
16	GO:0010287: plastoglobule	4.58E-08
17	GO:0010319: stromule	6.60E-08
18	GO:0031969: chloroplast membrane	2.06E-07
19	GO:0048046: apoplast	4.88E-07
20	GO:0009523: photosystem II	8.94E-07
21	GO:0042651: thylakoid membrane	5.05E-06
22	GO:0009706: chloroplast inner membrane	7.85E-06
23	GO:0010007: magnesium chelatase complex	1.48E-05
24	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.60E-05
25	GO:0009522: photosystem I	2.13E-05
26	GO:0005960: glycine cleavage complex	3.30E-05
27	GO:0009517: PSII associated light-harvesting complex II	5.93E-05
28	GO:0016020: membrane	1.21E-04
29	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.36E-04
30	GO:0015935: small ribosomal subunit	1.48E-04
31	GO:0009783: photosystem II antenna complex	3.02E-04
32	GO:0009295: nucleoid	5.46E-04
33	GO:0030093: chloroplast photosystem I	6.60E-04
34	GO:0042170: plastid membrane	6.60E-04
35	GO:0000427: plastid-encoded plastid RNA polymerase complex	6.60E-04
36	GO:0000311: plastid large ribosomal subunit	8.22E-04
37	GO:0009508: plastid chromosome	9.29E-04
38	GO:0009528: plastid inner membrane	1.07E-03
39	GO:0030076: light-harvesting complex	1.17E-03
40	GO:0009532: plastid stroma	1.74E-03
41	GO:0009544: chloroplast ATP synthase complex	2.06E-03
42	GO:0009527: plastid outer membrane	2.06E-03
43	GO:0055035: plastid thylakoid membrane	2.63E-03
44	GO:0009533: chloroplast stromal thylakoid	4.60E-03
45	GO:0030529: intracellular ribonucleoprotein complex	5.06E-03
46	GO:0009538: photosystem I reaction center	5.35E-03
47	GO:0005811: lipid particle	6.13E-03
48	GO:0015934: large ribosomal subunit	7.65E-03
49	GO:0032040: small-subunit processome	1.06E-02
50	GO:0043234: protein complex	1.48E-02
51	GO:0009707: chloroplast outer membrane	4.73E-02