gene detail

Gene description

TAIR ID: AT1G51140

Short description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Pathogen responsiveness: -0.41

General responsiveness: 0.27

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

photoperiodism, flowering, regulation of transcription, DNA-templated, regulation of stomatal movement, transcription from RNA polymerase II promoter, cuticle development

GO cellular component

nucleus

GO molecular function

core promoter sequence-specific DNA binding, transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding, transcription factor activity, sequence-specific DNA binding, protein dimerization activity

Protein domain

Pfam	PF00010, Helix-loop-helix DNA-binding domain
SMART	SM00353, HLH

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790, AT2G38250, AT1G24260, AT5G49450, AT2G43010

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 3

click to view PPI network

Coexpression network

GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

12 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, WT, control	Col, WT, Bg h	-1.83	3.18E-08
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	-1.93	1.41E-08
GSE13739	Col, WT, control 0 h	Col, WT, G.orontii 6 h	1.53	3.41E-03
GSE13739	Col, WT, control 7 d	Col, WT, G.orontii 7 d	-1.96	6.26E-05
GSE17464	Penta, control	Penta, Alternaria brassicicola 3 d	2.04	1.22E-05
GSE17464	Penta, control	Penta, PstDC3000 12 h	1.77	1.23E-04
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-3.17	5.59E-07
GSE50526	Col, WT, mock 9 h	Col, WT, A. brassicicola 9 h	-2.28	3.45E-04
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	2.78	4.66E-07
GSE56094	Col, WT, control 6 h	Col, WT, hrpA- 6 h	-1.57	1.30E-06
GSE56094	Col, WT, control 8 h	Col, WT, hrpA- 8 h	-1.55	5.30E-07
GSE5616	Col, WT, water 12 h	Col, WT, P. infestans 12 h	-1.61	8.49E-06