gene detail

Gene description

TAIR ID: AT1G19720

Short description: Pentatricopeptide repeat (PPR-like) superfamily protein

Pathogen responsiveness: -0.52

General responsiveness: 0.64

Orthologous

Rice:

OS03G0807400

Maize:

GRMZM2G143646

Wheat: No orthologous gene

GO biological process

biological_process

GO cellular component

nucleus, cytoplasm, chloroplast

GO molecular function

zinc ion binding

Protein domain

Pfam	PF01535, PPR repeat
Pfam	PF14432, DYW family of nucleic acid deaminases
Pfam	PF13041, PPR repeat family

Metabolic pathway

PWY-3781: aerobic respiration (cytochrome c)

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT4G36990

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

10 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Penta, control	Penta, Flg22 2 h	-1.93	4.09E-06
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-1.79	6.26E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.79	7.55E-09
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.86	6.62E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-1.72	2.34E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.74	1.63E-12
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-2.76	1.77E-04
GSE5520	Col, WT, control 10 h	Col, WT, Cor- hrpS- 10 h	-1.82	4.09E-02
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.98	8.07E-04
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-2.05	3.16E-03