Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G19720

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042820: vitamin B6 catabolic process0.00E+00
2GO:0015882: L-ascorbic acid transport0.00E+00
3GO:0018023: peptidyl-lysine trimethylation0.00E+00
4GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
5GO:0071474: cellular hyperosmotic response0.00E+00
6GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
7GO:1902458: positive regulation of stomatal opening0.00E+00
8GO:0070125: mitochondrial translational elongation0.00E+00
9GO:2000505: regulation of energy homeostasis0.00E+00
10GO:0017038: protein import0.00E+00
11GO:0090470: shoot organ boundary specification0.00E+00
12GO:0046460: neutral lipid biosynthetic process0.00E+00
13GO:0090279: regulation of calcium ion import0.00E+00
14GO:0042407: cristae formation0.00E+00
15GO:0042821: pyridoxal biosynthetic process0.00E+00
16GO:0015995: chlorophyll biosynthetic process1.08E-06
17GO:0045038: protein import into chloroplast thylakoid membrane2.87E-06
18GO:0010207: photosystem II assembly7.00E-06
19GO:1903426: regulation of reactive oxygen species biosynthetic process9.09E-06
20GO:0046653: tetrahydrofolate metabolic process6.74E-05
21GO:0006021: inositol biosynthetic process1.18E-04
22GO:0009904: chloroplast accumulation movement1.82E-04
23GO:0010190: cytochrome b6f complex assembly2.58E-04
24GO:0009903: chloroplast avoidance movement3.46E-04
25GO:0030488: tRNA methylation3.46E-04
26GO:0009658: chloroplast organization4.19E-04
27GO:0043266: regulation of potassium ion transport4.53E-04
28GO:0000481: maturation of 5S rRNA4.53E-04
29GO:0006659: phosphatidylserine biosynthetic process4.53E-04
30GO:0043686: co-translational protein modification4.53E-04
31GO:2000021: regulation of ion homeostasis4.53E-04
32GO:0010028: xanthophyll cycle4.53E-04
33GO:0034337: RNA folding4.53E-04
34GO:0010362: negative regulation of anion channel activity by blue light4.53E-04
35GO:0015969: guanosine tetraphosphate metabolic process4.53E-04
36GO:0009443: pyridoxal 5'-phosphate salvage4.53E-04
37GO:1902478: negative regulation of defense response to bacterium, incompatible interaction4.53E-04
38GO:0031426: polycistronic mRNA processing4.53E-04
39GO:0006605: protein targeting5.55E-04
40GO:2000070: regulation of response to water deprivation5.55E-04
41GO:0009791: post-embryonic development7.77E-04
42GO:0006783: heme biosynthetic process8.12E-04
43GO:0010206: photosystem II repair8.12E-04
44GO:0006779: porphyrin-containing compound biosynthetic process9.56E-04
45GO:1900865: chloroplast RNA modification9.56E-04
46GO:0007154: cell communication9.79E-04
47GO:0018026: peptidyl-lysine monomethylation9.79E-04
48GO:0006423: cysteinyl-tRNA aminoacylation9.79E-04
49GO:0006435: threonyl-tRNA aminoacylation9.79E-04
50GO:0080183: response to photooxidative stress9.79E-04
51GO:0010155: regulation of proton transport9.79E-04
52GO:0051262: protein tetramerization9.79E-04
53GO:0006782: protoporphyrinogen IX biosynthetic process1.11E-03
54GO:0010027: thylakoid membrane organization1.34E-03
55GO:0016024: CDP-diacylglycerol biosynthetic process1.47E-03
56GO:0045037: protein import into chloroplast stroma1.47E-03
57GO:0034051: negative regulation of plant-type hypersensitive response1.59E-03
58GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.59E-03
59GO:0045493: xylan catabolic process1.59E-03
60GO:0000913: preprophase band assembly1.59E-03
61GO:0033591: response to L-ascorbic acid1.59E-03
62GO:0031022: nuclear migration along microfilament1.59E-03
63GO:0007568: aging2.27E-03
64GO:0006164: purine nucleotide biosynthetic process2.31E-03
65GO:0006168: adenine salvage2.31E-03
66GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.31E-03
67GO:0010371: regulation of gibberellin biosynthetic process2.31E-03
68GO:0006166: purine ribonucleoside salvage2.31E-03
69GO:0009102: biotin biosynthetic process2.31E-03
70GO:0009152: purine ribonucleotide biosynthetic process2.31E-03
71GO:0010239: chloroplast mRNA processing2.31E-03
72GO:0033014: tetrapyrrole biosynthetic process2.31E-03
73GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.31E-03
74GO:0055114: oxidation-reduction process2.91E-03
75GO:0071483: cellular response to blue light3.10E-03
76GO:0010109: regulation of photosynthesis3.10E-03
77GO:0009765: photosynthesis, light harvesting3.10E-03
78GO:2000306: positive regulation of photomorphogenesis3.10E-03
79GO:0022622: root system development3.10E-03
80GO:0015979: photosynthesis3.28E-03
81GO:0016120: carotene biosynthetic process3.98E-03
82GO:0006564: L-serine biosynthetic process3.98E-03
83GO:0031365: N-terminal protein amino acid modification3.98E-03
84GO:0016123: xanthophyll biosynthetic process3.98E-03
85GO:0044209: AMP salvage3.98E-03
86GO:0009306: protein secretion4.12E-03
87GO:0009416: response to light stimulus4.40E-03
88GO:0046855: inositol phosphate dephosphorylation4.92E-03
89GO:0010264: myo-inositol hexakisphosphate biosynthetic process4.92E-03
90GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.92E-03
91GO:0006655: phosphatidylglycerol biosynthetic process4.92E-03
92GO:0016554: cytidine to uridine editing4.92E-03
93GO:0045962: positive regulation of development, heterochronic4.92E-03
94GO:0007018: microtubule-based movement5.60E-03
95GO:0034389: lipid particle organization5.94E-03
96GO:0016032: viral process6.87E-03
97GO:0032880: regulation of protein localization7.03E-03
98GO:0009395: phospholipid catabolic process7.03E-03
99GO:0006614: SRP-dependent cotranslational protein targeting to membrane7.03E-03
100GO:0032508: DNA duplex unwinding8.18E-03
101GO:0016559: peroxisome fission8.18E-03
102GO:0048564: photosystem I assembly8.18E-03
103GO:0071482: cellular response to light stimulus9.38E-03
104GO:0022900: electron transport chain9.38E-03
105GO:0015996: chlorophyll catabolic process9.38E-03
106GO:0007186: G-protein coupled receptor signaling pathway9.38E-03
107GO:0019432: triglyceride biosynthetic process1.07E-02
108GO:0048507: meristem development1.07E-02
109GO:0006189: 'de novo' IMP biosynthetic process1.07E-02
110GO:0098656: anion transmembrane transport1.07E-02
111GO:0009821: alkaloid biosynthetic process1.07E-02
112GO:0005982: starch metabolic process1.20E-02
113GO:0009638: phototropism1.20E-02
114GO:0043067: regulation of programmed cell death1.20E-02
115GO:0018298: protein-chromophore linkage1.22E-02
116GO:0006535: cysteine biosynthetic process from serine1.34E-02
117GO:0006811: ion transport1.35E-02
118GO:0008285: negative regulation of cell proliferation1.48E-02
119GO:1903507: negative regulation of nucleic acid-templated transcription1.48E-02
120GO:0006352: DNA-templated transcription, initiation1.48E-02
121GO:0018119: peptidyl-cysteine S-nitrosylation1.48E-02
122GO:0009684: indoleacetic acid biosynthetic process1.48E-02
123GO:0019684: photosynthesis, light reaction1.48E-02
124GO:0009089: lysine biosynthetic process via diaminopimelate1.48E-02
125GO:0006413: translational initiation1.49E-02
126GO:0009793: embryo development ending in seed dormancy1.53E-02
127GO:0009637: response to blue light1.55E-02
128GO:0006790: sulfur compound metabolic process1.63E-02
129GO:0007623: circadian rhythm1.63E-02
130GO:0009785: blue light signaling pathway1.79E-02
131GO:0009718: anthocyanin-containing compound biosynthetic process1.79E-02
132GO:0009725: response to hormone1.79E-02
133GO:0009767: photosynthetic electron transport chain1.79E-02
134GO:2000012: regulation of auxin polar transport1.79E-02
135GO:0006631: fatty acid metabolic process1.85E-02
136GO:0010020: chloroplast fission1.95E-02
137GO:0009266: response to temperature stimulus1.95E-02
138GO:0010143: cutin biosynthetic process1.95E-02
139GO:0090351: seedling development2.12E-02
140GO:0046854: phosphatidylinositol phosphorylation2.12E-02
141GO:0019853: L-ascorbic acid biosynthetic process2.12E-02
142GO:0006636: unsaturated fatty acid biosynthetic process2.29E-02
143GO:0006071: glycerol metabolic process2.29E-02
144GO:0006855: drug transmembrane transport2.34E-02
145GO:0007010: cytoskeleton organization2.46E-02
146GO:0006289: nucleotide-excision repair2.46E-02
147GO:0019344: cysteine biosynthetic process2.46E-02
148GO:0042538: hyperosmotic salinity response2.52E-02
149GO:0009768: photosynthesis, light harvesting in photosystem I2.64E-02
150GO:0010073: meristem maintenance2.64E-02
151GO:0008299: isoprenoid biosynthetic process2.64E-02
152GO:0016998: cell wall macromolecule catabolic process2.82E-02
153GO:0048511: rhythmic process2.82E-02
154GO:0061077: chaperone-mediated protein folding2.82E-02
155GO:2000022: regulation of jasmonic acid mediated signaling pathway3.01E-02
156GO:0031348: negative regulation of defense response3.01E-02
157GO:0080092: regulation of pollen tube growth3.01E-02
158GO:0010227: floral organ abscission3.20E-02
159GO:0019722: calcium-mediated signaling3.40E-02
160GO:0016117: carotenoid biosynthetic process3.60E-02
161GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.60E-02
162GO:0008284: positive regulation of cell proliferation3.60E-02
163GO:0042335: cuticle development3.81E-02
164GO:0010197: polar nucleus fusion4.01E-02
165GO:0010182: sugar mediated signaling pathway4.01E-02
166GO:0009741: response to brassinosteroid4.01E-02
167GO:0009958: positive gravitropism4.01E-02
168GO:0046777: protein autophosphorylation4.01E-02
169GO:0045489: pectin biosynthetic process4.01E-02
170GO:0042752: regulation of circadian rhythm4.23E-02
171GO:0009646: response to absence of light4.23E-02
172GO:0008654: phospholipid biosynthetic process4.44E-02
173GO:0010183: pollen tube guidance4.44E-02
RankGO TermAdjusted P value
1GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
2GO:0045435: lycopene epsilon cyclase activity0.00E+00
3GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
4GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
5GO:0015229: L-ascorbic acid transporter activity0.00E+00
6GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
7GO:0036033: mediator complex binding0.00E+00
8GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
9GO:0005048: signal sequence binding0.00E+00
10GO:0004076: biotin synthase activity0.00E+00
11GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
12GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
13GO:0043864: indoleacetamide hydrolase activity0.00E+00
14GO:0008115: sarcosine oxidase activity0.00E+00
15GO:0050613: delta14-sterol reductase activity0.00E+00
16GO:0016851: magnesium chelatase activity4.48E-07
17GO:0070402: NADPH binding3.12E-05
18GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.12E-04
19GO:0005525: GTP binding1.13E-04
20GO:0004040: amidase activity1.82E-04
21GO:0000293: ferric-chelate reductase activity2.58E-04
22GO:0004366: glycerol-3-phosphate O-acyltransferase activity2.58E-04
23GO:0005528: FK506 binding2.60E-04
24GO:0004325: ferrochelatase activity4.53E-04
25GO:0004853: uroporphyrinogen decarboxylase activity4.53E-04
26GO:0042586: peptide deformylase activity4.53E-04
27GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.53E-04
28GO:0010347: L-galactose-1-phosphate phosphatase activity4.53E-04
29GO:0016784: 3-mercaptopyruvate sulfurtransferase activity4.53E-04
30GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity4.53E-04
31GO:0005227: calcium activated cation channel activity4.53E-04
32GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.53E-04
33GO:0004856: xylulokinase activity4.53E-04
34GO:0009496: plastoquinol--plastocyanin reductase activity4.53E-04
35GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase9.79E-04
36GO:0004512: inositol-3-phosphate synthase activity9.79E-04
37GO:0008728: GTP diphosphokinase activity9.79E-04
38GO:0048531: beta-1,3-galactosyltransferase activity9.79E-04
39GO:0050017: L-3-cyanoalanine synthase activity9.79E-04
40GO:0042389: omega-3 fatty acid desaturase activity9.79E-04
41GO:0009977: proton motive force dependent protein transmembrane transporter activity9.79E-04
42GO:0004617: phosphoglycerate dehydrogenase activity9.79E-04
43GO:0052832: inositol monophosphate 3-phosphatase activity9.79E-04
44GO:0004817: cysteine-tRNA ligase activity9.79E-04
45GO:0008934: inositol monophosphate 1-phosphatase activity9.79E-04
46GO:0004829: threonine-tRNA ligase activity9.79E-04
47GO:0052833: inositol monophosphate 4-phosphatase activity9.79E-04
48GO:0016491: oxidoreductase activity1.47E-03
49GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.59E-03
50GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.59E-03
51GO:0008864: formyltetrahydrofolate deformylase activity1.59E-03
52GO:0015462: ATPase-coupled protein transmembrane transporter activity1.59E-03
53GO:0005504: fatty acid binding1.59E-03
54GO:0003913: DNA photolyase activity1.59E-03
55GO:0016788: hydrolase activity, acting on ester bonds1.84E-03
56GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.88E-03
57GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.27E-03
58GO:0004792: thiosulfate sulfurtransferase activity2.31E-03
59GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.31E-03
60GO:0009882: blue light photoreceptor activity2.31E-03
61GO:0048027: mRNA 5'-UTR binding2.31E-03
62GO:0003999: adenine phosphoribosyltransferase activity2.31E-03
63GO:0003746: translation elongation factor activity2.55E-03
64GO:0003993: acid phosphatase activity2.70E-03
65GO:0046556: alpha-L-arabinofuranosidase activity3.10E-03
66GO:0016279: protein-lysine N-methyltransferase activity3.10E-03
67GO:0001053: plastid sigma factor activity3.10E-03
68GO:0004045: aminoacyl-tRNA hydrolase activity3.10E-03
69GO:0016987: sigma factor activity3.10E-03
70GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.10E-03
71GO:0070628: proteasome binding3.10E-03
72GO:0045430: chalcone isomerase activity3.10E-03
73GO:0009044: xylan 1,4-beta-xylosidase activity3.10E-03
74GO:0016773: phosphotransferase activity, alcohol group as acceptor3.98E-03
75GO:0008017: microtubule binding4.00E-03
76GO:0042578: phosphoric ester hydrolase activity4.92E-03
77GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.92E-03
78GO:2001070: starch binding4.92E-03
79GO:0031593: polyubiquitin binding4.92E-03
80GO:0003924: GTPase activity5.17E-03
81GO:0004144: diacylglycerol O-acyltransferase activity5.94E-03
82GO:0005261: cation channel activity5.94E-03
83GO:0009927: histidine phosphotransfer kinase activity5.94E-03
84GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.94E-03
85GO:0004124: cysteine synthase activity5.94E-03
86GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.94E-03
87GO:0004017: adenylate kinase activity5.94E-03
88GO:0016832: aldehyde-lyase activity5.94E-03
89GO:0009881: photoreceptor activity7.03E-03
90GO:0043022: ribosome binding8.18E-03
91GO:0004033: aldo-keto reductase (NADP) activity8.18E-03
92GO:0008312: 7S RNA binding8.18E-03
93GO:0008173: RNA methyltransferase activity9.38E-03
94GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water9.38E-03
95GO:0008135: translation factor activity, RNA binding9.38E-03
96GO:0008236: serine-type peptidase activity1.16E-02
97GO:0052689: carboxylic ester hydrolase activity1.17E-02
98GO:0016844: strictosidine synthase activity1.20E-02
99GO:0008559: xenobiotic-transporting ATPase activity1.48E-02
100GO:0005089: Rho guanyl-nucleotide exchange factor activity1.48E-02
101GO:0008081: phosphoric diester hydrolase activity1.79E-02
102GO:0005315: inorganic phosphate transmembrane transporter activity1.79E-02
103GO:0031072: heat shock protein binding1.79E-02
104GO:0000155: phosphorelay sensor kinase activity1.79E-02
105GO:0004565: beta-galactosidase activity1.79E-02
106GO:0008083: growth factor activity1.95E-02
107GO:0003743: translation initiation factor activity1.99E-02
108GO:0051537: 2 iron, 2 sulfur cluster binding2.17E-02
109GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.21E-02
110GO:0042802: identical protein binding2.21E-02
111GO:0031409: pigment binding2.29E-02
112GO:0003714: transcription corepressor activity2.46E-02
113GO:0051536: iron-sulfur cluster binding2.46E-02
114GO:0043130: ubiquitin binding2.46E-02
115GO:0051087: chaperone binding2.64E-02
116GO:0003723: RNA binding2.99E-02
117GO:0003777: microtubule motor activity2.99E-02
118GO:0030570: pectate lyase activity3.20E-02
119GO:0050660: flavin adenine dinucleotide binding3.39E-02
120GO:0008514: organic anion transmembrane transporter activity3.40E-02
121GO:0016887: ATPase activity3.47E-02
122GO:0003729: mRNA binding3.65E-02
123GO:0016746: transferase activity, transferring acyl groups3.96E-02
124GO:0008080: N-acetyltransferase activity4.01E-02
125GO:0005509: calcium ion binding4.01E-02
126GO:0010181: FMN binding4.23E-02
127GO:0016853: isomerase activity4.23E-02
128GO:0004872: receptor activity4.44E-02
129GO:0048038: quinone binding4.66E-02
130GO:0004871: signal transducer activity4.87E-02
131GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.92E-02
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Gene type



Gene DE type