gene detail

Gene description

TAIR ID: AT1G10560

Short description: plant U-box 18

Pathogen responsiveness: -1.29

General responsiveness: -1.67

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

regulation of stomatal movement, protein ubiquitination, abscisic acid-activated signaling pathway, regulation of abscisic acid-activated signaling pathway, regulation of seed germination

GO cellular component

cytoplasm, nucleus, membrane, endomembrane system

GO molecular function

ubiquitin-protein transferase activity, ubiquitin protein ligase activity, protein binding

Protein domain

Pfam	PF00514, Armadillo/beta-catenin-like repeat
Pfam	PF04564, U-box domain
SMART	SM00185, ARM
SMART	SM00504, Ubox

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G11590, AT2G43010

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

6 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	-1.92	2.55E-04
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-2.36	7.23E-04
GSE37269	Wt1, WT, control	Wt1, WT, TEV 21 d	-1.81	2.16E-02
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 EV	2.02	3.57E-04
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	1.89	9.38E-12
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	1.59	1.10E-06