Gene description
TAIR ID: AT1G08540
Short description: RNApolymerase sigma subunit 2
Pathogen responsiveness: -0.19
General responsiveness: 1.63
GO biological process
cellular response to light stimulus, response to blue light, chloroplast organization, DNA-templated transcription, initiation, regulation of transcription, DNA-templated, tRNA metabolic process, response to red light, regulation of RNA biosynthetic process
GO cellular component
chloroplast
GO molecular function
transcription factor activity, sequence-specific DNA binding, plastid sigma factor activity, DNA-directed 5'-3' RNA polymerase activity, DNA binding, sigma factor activity
Protein domain
| Pfam | PF04542, Sigma-70 region 2 |
| Pfam | PF04545, Sigma-70, region 4 |
| Pfam | PF04539, Sigma-70 region 3 |
Metabolic pathway
Not involved in metabolic pathway
KEGG pathway
Not involved in KEGG pathway
Transcriptional regulation
No regulation information
Protein-protein interaction network
No Interactor
Coexpression network
Differentially expressed condition 
16 conditions
| Series | Control | Treatment | Log2FC | Adj. P value |
|---|---|---|---|---|
| GSE12856 | Col, ataf1, control | Col, ataf1, Bg h | -1.56 | 1.20E-06 |
| GSE17464 | Laer, control | Laer, Flg22 2 h | -1.70 | 5.44E-06 |
| GSE17464 | Penta, control | Penta, Flg22 2 h | -1.56 | 1.61E-05 |
| GSE18978 | Col, WT, control 24 h | Col, WT, PsmES4326 24 h | -2.16 | 1.89E-11 |
| GSE21920 | Col, WT, mock | Col, WT, Pto HopZ1a 6 h | -1.67 | 4.57E-07 |
| GSE37269 | St0, WT, control | St0, WT, TEV 21 d | -1.50 | 1.71E-02 |
| GSE45212 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 12 h | -2.56 | 4.22E-14 |
| GSE45212 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 8 h | -2.17 | 6.04E-13 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 12 h | -1.94 | 2.24E-12 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 4 h | -1.71 | 1.55E-11 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 8 h | -2.32 | 1.45E-13 |
| GSE45214 | Col, med16, PstDC3000 AvrRpt2 0 h | Col, med16, PstDC3000 AvrRpt2 4 h | -1.93 | 1.29E-12 |
| GSE5520 | Col, WT, control 10 h | Col, WT, Cor- 10 h | -1.61 | 1.72E-04 |
| GSE5520 | Col, WT, control 7 h | Col, WT, PstDC3000 7 h | -2.19 | 1.54E-07 |
| GSE58954 | Col, WT, Psm AvrRpt2 0 h | Col, WT, Psm AvrRpt2 6 h | -1.68 | 2.26E-03 |
| GSE6176 | Col, WT, control 12 h | Col, WT, PstDC3000 12 h | -1.56 | 2.20E-06 |
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