Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G08540

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070125: mitochondrial translational elongation0.00E+00
2GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
3GO:0009715: chalcone biosynthetic process0.00E+00
4GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
5GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
6GO:0042821: pyridoxal biosynthetic process0.00E+00
7GO:0007638: mechanosensory behavior0.00E+00
8GO:0042820: vitamin B6 catabolic process0.00E+00
9GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
10GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
11GO:0006114: glycerol biosynthetic process0.00E+00
12GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
13GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
14GO:0015979: photosynthesis4.23E-08
15GO:0010027: thylakoid membrane organization3.74E-06
16GO:1902326: positive regulation of chlorophyll biosynthetic process4.70E-06
17GO:0018298: protein-chromophore linkage7.50E-06
18GO:0009793: embryo development ending in seed dormancy1.05E-05
19GO:0006364: rRNA processing5.06E-05
20GO:0009765: photosynthesis, light harvesting6.61E-05
21GO:0006021: inositol biosynthetic process6.61E-05
22GO:0016123: xanthophyll biosynthetic process1.04E-04
23GO:0016120: carotene biosynthetic process1.04E-04
24GO:0042549: photosystem II stabilization1.50E-04
25GO:0046855: inositol phosphate dephosphorylation1.50E-04
26GO:0046167: glycerol-3-phosphate biosynthetic process3.22E-04
27GO:0043007: maintenance of rDNA3.22E-04
28GO:0034337: RNA folding3.22E-04
29GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.22E-04
30GO:0006419: alanyl-tRNA aminoacylation3.22E-04
31GO:0010493: Lewis a epitope biosynthetic process3.22E-04
32GO:0000476: maturation of 4.5S rRNA3.22E-04
33GO:0009443: pyridoxal 5'-phosphate salvage3.22E-04
34GO:0000967: rRNA 5'-end processing3.22E-04
35GO:0043953: protein transport by the Tat complex3.22E-04
36GO:0000481: maturation of 5S rRNA3.22E-04
37GO:0065002: intracellular protein transmembrane transport3.22E-04
38GO:0043686: co-translational protein modification3.22E-04
39GO:0006436: tryptophanyl-tRNA aminoacylation3.22E-04
40GO:0048564: photosystem I assembly3.36E-04
41GO:0006096: glycolytic process5.62E-04
42GO:0010024: phytochromobilin biosynthetic process7.02E-04
43GO:0080181: lateral root branching7.02E-04
44GO:0034470: ncRNA processing7.02E-04
45GO:0010275: NAD(P)H dehydrogenase complex assembly7.02E-04
46GO:0009629: response to gravity7.02E-04
47GO:0080005: photosystem stoichiometry adjustment7.02E-04
48GO:0006435: threonyl-tRNA aminoacylation7.02E-04
49GO:0006432: phenylalanyl-tRNA aminoacylation7.02E-04
50GO:0006650: glycerophospholipid metabolic process7.02E-04
51GO:0018026: peptidyl-lysine monomethylation7.02E-04
52GO:0000256: allantoin catabolic process7.02E-04
53GO:0009658: chloroplast organization7.23E-04
54GO:0006790: sulfur compound metabolic process8.99E-04
55GO:0006094: gluconeogenesis1.02E-03
56GO:0005977: glycogen metabolic process1.14E-03
57GO:0046168: glycerol-3-phosphate catabolic process1.14E-03
58GO:0010207: photosystem II assembly1.14E-03
59GO:0006954: inflammatory response1.14E-03
60GO:0090391: granum assembly1.14E-03
61GO:0010020: chloroplast fission1.14E-03
62GO:0006788: heme oxidation1.14E-03
63GO:0010136: ureide catabolic process1.14E-03
64GO:0019853: L-ascorbic acid biosynthetic process1.28E-03
65GO:0046854: phosphatidylinositol phosphorylation1.28E-03
66GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.63E-03
67GO:0006020: inositol metabolic process1.63E-03
68GO:0007231: osmosensory signaling pathway1.63E-03
69GO:0009102: biotin biosynthetic process1.63E-03
70GO:0006072: glycerol-3-phosphate metabolic process1.63E-03
71GO:0009052: pentose-phosphate shunt, non-oxidative branch1.63E-03
72GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.63E-03
73GO:0006145: purine nucleobase catabolic process1.63E-03
74GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.63E-03
75GO:0009768: photosynthesis, light harvesting in photosystem I1.74E-03
76GO:0009451: RNA modification1.76E-03
77GO:0016042: lipid catabolic process1.98E-03
78GO:0051781: positive regulation of cell division2.19E-03
79GO:0015994: chlorophyll metabolic process2.19E-03
80GO:0033500: carbohydrate homeostasis2.19E-03
81GO:0006546: glycine catabolic process2.19E-03
82GO:0010021: amylopectin biosynthetic process2.19E-03
83GO:0016558: protein import into peroxisome matrix2.80E-03
84GO:0006564: L-serine biosynthetic process2.80E-03
85GO:0010236: plastoquinone biosynthetic process2.80E-03
86GO:0031365: N-terminal protein amino acid modification2.80E-03
87GO:0042254: ribosome biogenesis3.41E-03
88GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.46E-03
89GO:0006655: phosphatidylglycerol biosynthetic process3.46E-03
90GO:0042793: transcription from plastid promoter3.46E-03
91GO:0010190: cytochrome b6f complex assembly3.46E-03
92GO:1901259: chloroplast rRNA processing4.17E-03
93GO:0010189: vitamin E biosynthetic process4.17E-03
94GO:0006401: RNA catabolic process4.92E-03
95GO:0010196: nonphotochemical quenching4.92E-03
96GO:0009645: response to low light intensity stimulus4.92E-03
97GO:0006400: tRNA modification4.92E-03
98GO:0000105: histidine biosynthetic process5.71E-03
99GO:0009231: riboflavin biosynthetic process5.71E-03
100GO:0016559: peroxisome fission5.71E-03
101GO:0006402: mRNA catabolic process5.71E-03
102GO:0030091: protein repair5.71E-03
103GO:0009642: response to light intensity5.71E-03
104GO:0006605: protein targeting5.71E-03
105GO:0032508: DNA duplex unwinding5.71E-03
106GO:0006875: cellular metal ion homeostasis5.71E-03
107GO:0031540: regulation of anthocyanin biosynthetic process5.71E-03
108GO:0017004: cytochrome complex assembly6.55E-03
109GO:0009657: plastid organization6.55E-03
110GO:0032544: plastid translation6.55E-03
111GO:0015995: chlorophyll biosynthetic process6.56E-03
112GO:0016311: dephosphorylation6.91E-03
113GO:0006098: pentose-phosphate shunt7.42E-03
114GO:0055114: oxidation-reduction process7.82E-03
115GO:0005982: starch metabolic process8.34E-03
116GO:0031425: chloroplast RNA processing8.34E-03
117GO:0007568: aging8.41E-03
118GO:0006816: calcium ion transport1.03E-02
119GO:0019684: photosynthesis, light reaction1.03E-02
120GO:0009089: lysine biosynthetic process via diaminopimelate1.03E-02
121GO:0072593: reactive oxygen species metabolic process1.03E-02
122GO:1903507: negative regulation of nucleic acid-templated transcription1.03E-02
123GO:0006415: translational termination1.03E-02
124GO:0018119: peptidyl-cysteine S-nitrosylation1.03E-02
125GO:0005983: starch catabolic process1.13E-02
126GO:0016024: CDP-diacylglycerol biosynthetic process1.13E-02
127GO:0045037: protein import into chloroplast stroma1.13E-02
128GO:2000012: regulation of auxin polar transport1.24E-02
129GO:0006006: glucose metabolic process1.24E-02
130GO:0019253: reductive pentose-phosphate cycle1.35E-02
131GO:0010030: positive regulation of seed germination1.46E-02
132GO:0070588: calcium ion transmembrane transport1.46E-02
133GO:0006833: water transport1.58E-02
134GO:0000162: tryptophan biosynthetic process1.58E-02
135GO:0006863: purine nucleobase transport1.58E-02
136GO:0010224: response to UV-B1.67E-02
137GO:0019953: sexual reproduction1.83E-02
138GO:0008299: isoprenoid biosynthetic process1.83E-02
139GO:0006418: tRNA aminoacylation for protein translation1.83E-02
140GO:0048511: rhythmic process1.95E-02
141GO:0019915: lipid storage1.95E-02
142GO:0061077: chaperone-mediated protein folding1.95E-02
143GO:0048278: vesicle docking1.95E-02
144GO:2000022: regulation of jasmonic acid mediated signaling pathway2.08E-02
145GO:0006012: galactose metabolic process2.22E-02
146GO:0071369: cellular response to ethylene stimulus2.22E-02
147GO:0009306: protein secretion2.35E-02
148GO:0016117: carotenoid biosynthetic process2.49E-02
149GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.49E-02
150GO:0042631: cellular response to water deprivation2.63E-02
151GO:0008033: tRNA processing2.63E-02
152GO:0034220: ion transmembrane transport2.63E-02
153GO:0000413: protein peptidyl-prolyl isomerization2.63E-02
154GO:0006520: cellular amino acid metabolic process2.78E-02
155GO:0048868: pollen tube development2.78E-02
156GO:0055085: transmembrane transport2.82E-02
157GO:0006457: protein folding2.90E-02
158GO:0061025: membrane fusion2.92E-02
159GO:0042752: regulation of circadian rhythm2.92E-02
160GO:0032259: methylation2.99E-02
161GO:0055072: iron ion homeostasis3.07E-02
162GO:0019252: starch biosynthetic process3.07E-02
163GO:0008654: phospholipid biosynthetic process3.07E-02
164GO:0002229: defense response to oomycetes3.23E-02
165GO:0010193: response to ozone3.23E-02
166GO:0006635: fatty acid beta-oxidation3.23E-02
167GO:0009790: embryo development3.36E-02
168GO:0032502: developmental process3.38E-02
169GO:0010583: response to cyclopentenone3.38E-02
170GO:0009567: double fertilization forming a zygote and endosperm3.70E-02
171GO:0006413: translational initiation3.70E-02
172GO:0001666: response to hypoxia4.19E-02
173GO:0009911: positive regulation of flower development4.19E-02
174GO:0009627: systemic acquired resistance4.53E-02
175GO:0042128: nitrate assimilation4.53E-02
176GO:0006906: vesicle fusion4.53E-02
RankGO TermAdjusted P value
1GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
2GO:0050281: serine-glyoxylate transaminase activity0.00E+00
3GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity0.00E+00
4GO:0004076: biotin synthase activity0.00E+00
5GO:0043136: glycerol-3-phosphatase activity0.00E+00
6GO:0000121: glycerol-1-phosphatase activity0.00E+00
7GO:0010349: L-galactose dehydrogenase activity0.00E+00
8GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
9GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
10GO:0016210: naringenin-chalcone synthase activity0.00E+00
11GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
12GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
13GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
14GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
15GO:0045435: lycopene epsilon cyclase activity0.00E+00
16GO:0004760: serine-pyruvate transaminase activity0.00E+00
17GO:0042623: ATPase activity, coupled0.00E+00
18GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
19GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
20GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
21GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.36E-06
22GO:0052832: inositol monophosphate 3-phosphatase activity4.70E-06
23GO:0008934: inositol monophosphate 1-phosphatase activity4.70E-06
24GO:0052833: inositol monophosphate 4-phosphatase activity4.70E-06
25GO:0070402: NADPH binding1.67E-05
26GO:0043495: protein anchor6.61E-05
27GO:0016168: chlorophyll binding7.77E-05
28GO:0005528: FK506 binding1.27E-04
29GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.05E-04
30GO:0019899: enzyme binding2.67E-04
31GO:0004654: polyribonucleotide nucleotidyltransferase activity3.22E-04
32GO:0010347: L-galactose-1-phosphate phosphatase activity3.22E-04
33GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.22E-04
34GO:0004347: glucose-6-phosphate isomerase activity3.22E-04
35GO:0046920: alpha-(1->3)-fucosyltransferase activity3.22E-04
36GO:0050308: sugar-phosphatase activity3.22E-04
37GO:0004813: alanine-tRNA ligase activity3.22E-04
38GO:0019203: carbohydrate phosphatase activity3.22E-04
39GO:0042586: peptide deformylase activity3.22E-04
40GO:0015088: copper uptake transmembrane transporter activity3.22E-04
41GO:0004830: tryptophan-tRNA ligase activity3.22E-04
42GO:0004033: aldo-keto reductase (NADP) activity3.36E-04
43GO:0047746: chlorophyllase activity7.02E-04
44GO:0009977: proton motive force dependent protein transmembrane transporter activity7.02E-04
45GO:0004617: phosphoglycerate dehydrogenase activity7.02E-04
46GO:0004047: aminomethyltransferase activity7.02E-04
47GO:0004826: phenylalanine-tRNA ligase activity7.02E-04
48GO:0004829: threonine-tRNA ligase activity7.02E-04
49GO:0019156: isoamylase activity7.02E-04
50GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.02E-04
51GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.02E-04
52GO:0016788: hydrolase activity, acting on ester bonds7.47E-04
53GO:0000049: tRNA binding8.99E-04
54GO:0019843: rRNA binding1.05E-03
55GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.14E-03
56GO:0003913: DNA photolyase activity1.14E-03
57GO:0004148: dihydrolipoyl dehydrogenase activity1.14E-03
58GO:0004751: ribose-5-phosphate isomerase activity1.14E-03
59GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.14E-03
60GO:0052689: carboxylic ester hydrolase activity1.25E-03
61GO:0031409: pigment binding1.42E-03
62GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.63E-03
63GO:0016149: translation release factor activity, codon specific1.63E-03
64GO:0051537: 2 iron, 2 sulfur cluster binding2.03E-03
65GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.19E-03
66GO:0008453: alanine-glyoxylate transaminase activity2.19E-03
67GO:0004045: aminoacyl-tRNA hydrolase activity2.19E-03
68GO:0004392: heme oxygenase (decyclizing) activity2.19E-03
69GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.19E-03
70GO:0016279: protein-lysine N-methyltransferase activity2.19E-03
71GO:0022891: substrate-specific transmembrane transporter activity2.28E-03
72GO:0051287: NAD binding2.35E-03
73GO:0042802: identical protein binding2.46E-03
74GO:2001070: starch binding3.46E-03
75GO:0004332: fructose-bisphosphate aldolase activity3.46E-03
76GO:0004556: alpha-amylase activity3.46E-03
77GO:0042578: phosphoric ester hydrolase activity3.46E-03
78GO:0008195: phosphatidate phosphatase activity4.17E-03
79GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.17E-03
80GO:0009881: photoreceptor activity4.92E-03
81GO:0016597: amino acid binding5.26E-03
82GO:0043022: ribosome binding5.71E-03
83GO:0003723: RNA binding7.11E-03
84GO:0003747: translation release factor activity7.42E-03
85GO:0008417: fucosyltransferase activity7.42E-03
86GO:0008138: protein tyrosine/serine/threonine phosphatase activity7.42E-03
87GO:0003924: GTPase activity8.33E-03
88GO:0005381: iron ion transmembrane transporter activity8.34E-03
89GO:0004519: endonuclease activity9.46E-03
90GO:0003993: acid phosphatase activity9.65E-03
91GO:0031072: heat shock protein binding1.24E-02
92GO:0005262: calcium channel activity1.24E-02
93GO:0000175: 3'-5'-exoribonuclease activity1.24E-02
94GO:0008081: phosphoric diester hydrolase activity1.24E-02
95GO:0003714: transcription corepressor activity1.70E-02
96GO:0043424: protein histidine kinase binding1.83E-02
97GO:0005345: purine nucleobase transmembrane transporter activity1.83E-02
98GO:0004176: ATP-dependent peptidase activity1.95E-02
99GO:0004812: aminoacyl-tRNA ligase activity2.49E-02
100GO:0042803: protein homodimerization activity2.58E-02
101GO:0016853: isomerase activity2.92E-02
102GO:0048038: quinone binding3.23E-02
103GO:0008483: transaminase activity3.86E-02
104GO:0005525: GTP binding4.10E-02
105GO:0008017: microtubule binding4.14E-02
106GO:0015250: water channel activity4.19E-02
107GO:0003743: translation initiation factor activity4.62E-02
108GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.88E-02
RankGO TermAdjusted P value
1GO:0043235: receptor complex0.00E+00
2GO:0010368: chloroplast isoamylase complex0.00E+00
3GO:0009349: riboflavin synthase complex0.00E+00
4GO:0009507: chloroplast3.85E-67
5GO:0009535: chloroplast thylakoid membrane3.99E-26
6GO:0009570: chloroplast stroma1.93E-25
7GO:0009543: chloroplast thylakoid lumen7.55E-15
8GO:0009941: chloroplast envelope2.66E-14
9GO:0009534: chloroplast thylakoid2.03E-13
10GO:0031977: thylakoid lumen1.57E-09
11GO:0009579: thylakoid5.18E-09
12GO:0042646: plastid nucleoid3.71E-05
13GO:0009654: photosystem II oxygen evolving complex1.47E-04
14GO:0042651: thylakoid membrane1.47E-04
15GO:0010287: plastoglobule1.56E-04
16GO:0031361: integral component of thylakoid membrane3.22E-04
17GO:0009782: photosystem I antenna complex3.22E-04
18GO:0009515: granal stacked thylakoid3.22E-04
19GO:0009538: photosystem I reaction center3.36E-04
20GO:0019898: extrinsic component of membrane4.06E-04
21GO:0009523: photosystem II4.06E-04
22GO:0042644: chloroplast nucleoid4.95E-04
23GO:0000427: plastid-encoded plastid RNA polymerase complex7.02E-04
24GO:0009508: plastid chromosome1.02E-03
25GO:0030095: chloroplast photosystem II1.14E-03
26GO:0033281: TAT protein transport complex1.14E-03
27GO:0030076: light-harvesting complex1.28E-03
28GO:0009331: glycerol-3-phosphate dehydrogenase complex1.63E-03
29GO:0031897: Tic complex2.19E-03
30GO:0016363: nuclear matrix4.17E-03
31GO:0009706: chloroplast inner membrane4.21E-03
32GO:0009533: chloroplast stromal thylakoid4.92E-03
33GO:0009295: nucleoid4.95E-03
34GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.42E-03
35GO:0005759: mitochondrial matrix7.50E-03
36GO:0055028: cortical microtubule9.30E-03
37GO:0012511: monolayer-surrounded lipid storage body1.03E-02
38GO:0090404: pollen tube tip1.03E-02
39GO:0032040: small-subunit processome1.13E-02
40GO:0031969: chloroplast membrane1.94E-02
41GO:0009532: plastid stroma1.95E-02
42GO:0005840: ribosome2.10E-02
43GO:0009536: plastid2.73E-02
44GO:0009522: photosystem I2.92E-02
45GO:0009504: cell plate3.07E-02
46GO:0016020: membrane3.18E-02
47GO:0032580: Golgi cisterna membrane3.70E-02
48GO:0005778: peroxisomal membrane3.86E-02
49GO:0030529: intracellular ribonucleoprotein complex4.19E-02
50GO:0005887: integral component of plasma membrane4.60E-02
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Gene type



Gene DE type