Datasets
| Name | Download |
|---|---|
| HDF list (experimentally verified and predicted HDF candidates) | HDF_list.xlsx |
| Training dataset and independent test set | train_and_test.tar.gz |
Complex enrichment analysis
| Name | Download |
|---|---|
| List of complexes enriched with the 2,001 HDFs | Complex_list1.xlsx |
| List of complexes enriched with 1,144 experimentally known HDFs | Complex_list2.xlsx |
Software
HDFP (2020-08-18)
Download links: HDFP.tar.gz README GIANT_feature_matrix.txt.tar.gz
Command Line Interface Overview
USAGE
python HDFP.py [-i] [-o] [-d] [-h]
Example: python HDFP.py -i example.id -o example_result -d GIANT_feature_matrix.txt
OPTIONAL ARGUMENTS
-i The file contains Entrez Gene ID of test data.
-oThe file contains the result of prediction.
-dGIANT matrix. Note that if you want to predict, this file must be downloaded from our website. The file size is about 7G.
-hPrint USAGE, DESCRIPTION and ARGUMENT messages.
DESCRIPTION
Name: HDFP
Version: 1.0
Update Time: 2020-08-18
Dependencies
· Python3.6 or newer, https://www.python.org/
· Python packages
$ pip install -U scikit-learn == 0.21
$ pip install pandas == 0.24
$ pip install numpy == 1.16
$ pip install scipy == 1.3
$ pip install joblib == 0.13