gene detail

Gene description

RAP-DB: OS11G0592800

Short description: Similar to CDK5RAP1-like protein.

Orthologous

Arabidopsis:

AT4G36390

Maize: No orthologous

Wheat: No orthologous

GO biological process

tRNA modification (GO:0006400), RNA modification (GO:0009451), macromolecule modification (GO:0043412)

GO cellular component

cellular_component (GO:0005575), cytoplasm (GO:0005737)

GO molecular function

catalytic activity (GO:0003824), transferase activity (GO:0016740), iron-sulfur cluster binding (GO:0051536), 4 iron, 4 sulfur cluster binding (GO:0051539)

Protein domain

Pfam	PF00919, Uncharacterized protein family UPF0004
Pfam	PF01938, TRAM domain
Pfam	PF04055, Radical SAM superfamily
SMART	SM00729, Elp3

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Coexpression network

GSE63047_T7174R  view
GSE33411_IRBB5  view
GSE16793_XOO  view
GSE16793_XOC  view
GSE62894_S_77  view
GSE33411_IRBB7  view
GSE62893_S_15B  view
GSE33411_IR24  view
GSE63047_DELTAHRCV  view

Differentially expressed condition

4 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE36272	IR24, MOCK	IR24, Xanthomonas oryzae strain PXO99AME5	-1.67	6.77E-06
GSE36272	Nipponbare, MOCK	Nipponbare, Xanthomonas oryzae strain T7174	-1.66	1.19E-05
GSE62894	Nipponbare, pish, water 5 d	Nipponbare, pish, Magnaporthe oryzae Kyu77-07A 5 d	-5.22	3.06E-10
GSE7256	Nipponbare, Mock 4 d	Nipponbare, Magnaporthe grisea FR13 5 d	-1.66	1.32E-02