gene detail

Gene description

RAP-DB: OS04G0650800

Short description: Similar to Phosphoglycerate dehydrogenase.

Orthologous

Arabidopsis:

AT4G34200

Maize:

GRMZM2G081886

Wheat:

TA.24650.2.A1_AT TA.24650.2.A1_A_AT TA.24650.2.A1_X_AT

GO biological process

L-serine biosynthetic process (GO:0006564), metabolic process (GO:0008152), oxidation-reduction process (GO:0055114)

GO cellular component

unknown

GO molecular function

nucleotide binding (GO:0000166), phosphoglycerate dehydrogenase activity (GO:0004617), amino acid binding (GO:0016597), oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), cofactor binding (GO:0048037), NAD binding (GO:0051287)

Protein domain

Pfam	PF00389, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Pfam	PF02826, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Pfam	PF01842, ACT domain
SMART	SM00997, AdoHcyase_NAD

Metabolic pathway

SERSYN-PWY: serine biosynthesis

KEGG pathway

PATH:dosa01200: Carbon metabolism
PATH:dosa01230: Biosynthesis of amino acids
PATH:dosa00260: Glycine, serine and threonine metabolism

Coexpression network

GSE33411_IRBB7  view
GSE63047_T7174R  view
GSE33411_IRBB5  view
GSE16793_XOO  view
GSE16793_XOC  view
GSE63047_DELTAHRCV  view
GSE33411_IR24  view

Differentially expressed condition

26 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE33411	IR24, control	IR24, Xanthomonas oryzae pv. oryzae 12 h	1.83	1.42E-07
GSE33411	IR24, control	IR24, Xanthomonas oryzae pv. oryzae 3 h	1.64	1.36E-06
GSE33411	IRBB5, control	IRBB5, Xanthomonas oryzae pv. oryzae 12 h	1.88	9.14E-08
GSE33411	IRBB5, control	IRBB5, Xanthomonas oryzae pv. oryzae 3 h	1.74	5.11E-07
GSE33411	IRBB7, control	IRBB7, Xanthomonas oryzae pv. oryzae 12 h	1.53	2.96E-06
GSE33411	IRBB7, control	IRBB7, Xanthomonas oryzae pv. oryzae 3 h	1.56	2.82E-06
GSE36272	IR24, MOCK	IR24, Xanthomonas oryzae strain PXO86	2.18	3.66E-09
GSE36272	IR24, MOCK	IR24, Xanthomonas oryzae strain _PXO99A	2.46	6.37E-11
GSE36272	IR24, MOCK	IR24, Xanthomonas oryzae strain PXO99AME5	2.69	9.01E-12
GSE36272	IR24, MOCK	IR24, Xanthomonas oryzae strain PXO99A_2	2.01	6.48E-09
GSE36272	IR24, MOCK	IR24, Xanthomonas oryzae strain T7174	1.72	7.17E-07
GSE43050	IR24, Mock 96 h	IR24, Xanthomonas oryzae pv oryzae race 4 strain PXO71 96 h	2.44	5.85E-03
GSE62893	Nipponbare, Pia, water 2 d	Nipponbare, Pia, Magnaporthe oryzae P91-15B 2 d	4.28	3.17E-04
GSE62893	Nipponbare, pia, water 2 d	Nipponbare, pia, Magnaporthe oryzae P91-15B 2 d	3.59	3.24E-03
GSE62893	Nipponbare, pia, water 3 d	Nipponbare, pia, Magnaporthe oryzae P91-15B 3 d	3.23	5.70E-03
GSE62894	Nipponbare, Pish, water 2 d	Nipponbare, Pish, Magnaporthe oryzae Kyu77-07A 2 d	4.36	4.74E-07
GSE62894	Nipponbare, Pish, water 3 d	Nipponbare, Pish, Magnaporthe oryzae Kyu77-07A 3 d	3.63	1.11E-05
GSE62894	Nipponbare, Pish, water 5 d	Nipponbare, Pish, Magnaporthe oryzae Kyu77-07A 5 d	2.11	6.41E-03
GSE62894	Nipponbare, pish, water 2 d	Nipponbare, pish, Magnaporthe oryzae Kyu77-07A 2 d	3.22	2.24E-04
GSE62894	Nipponbare, pish, water 3 d	Nipponbare, pish, Magnaporthe oryzae Kyu77-07A 3 d	3.63	1.09E-05
GSE62895	Nipponbare, Pia, water 3 d	Nipponbare, Pia, Magnaporthe oryzae P91-15B 3 d	-1.72	4.50E-03
GSE62895	Nipponbare, pia, water 3 d	Nipponbare, pia, Magnaporthe oryzae P91-15B 3 d	-1.78	3.31E-03
GSE62895	Nipponbare, pia, water 5 d	Nipponbare, pia, Magnaporthe oryzae P91-15B 5 d	-1.64	7.73E-03
GSE63047	Nipponbare, water 4 d	Nipponbare, Xanthomonas oryzae T7174R 4 d	1.69	4.65E-03
GSE63047	Nipponbare, water 7 d	Nipponbare, Xanthomonas oryzae T7174R 7 d	1.57	1.02E-03
GSE7256	Nipponbare, Mock 4 d	Nipponbare, Magnaporthe grisea FR13 5 d	3.63	2.57E-04