gene detail

Gene description

Short description: Similar to Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP decarboxylase) (OMPDCase) (OMPdecase) (Uridine 5'-monophosphate synthase) (UMP synthase).

Orthologous

Arabidopsis:

AT3G54470

Maize:

GRMZM2G367026

Wheat:

TA.8467.1.S1_A_AT

GO biological process

'de novo' pyrimidine base biosynthetic process (GO:0006207), pyrimidine nucleotide biosynthetic process (GO:0006221), metabolic process (GO:0008152), nucleoside metabolic process (GO:0009116), 'de novo' UMP biosynthetic process (GO:0044205)

GO cellular component

unknown

GO molecular function

catalytic activity (GO:0003824), orotate phosphoribosyltransferase activity (GO:0004588), orotidine-5'-phosphate decarboxylase activity (GO:0004590)

Protein domain

Pfam	PF00215, Orotidine 5'-phosphate decarboxylase / HUMPS family
Pfam	PF00156, Phosphoribosyl transferase domain
SMART	SM00934, OMPdecase

Metabolic pathway

PWY-7211: superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis
PWY0-162: superpathway of pyrimidine ribonucleotides de novo biosynthesis
PWY-5686: UMP biosynthesis

KEGG pathway

PATH:dosa00240: Pyrimidine metabolism

Coexpression network

GSE62895_S_15B_ROOT  view
GSE63047_T7174R  view
GSE33411_IRBB5  view
GSE16793_XOO  view
GSE16793_XOC  view
GSE33411_IRBB7  view
GSE62893_S_15B  view
GSE62895_R_15B_ROOT  view
GSE63047_DELTAHRCV  view
GSE33411_IR24  view

Differentially expressed condition

14 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE19239	Japonica 9804, Rxo1, control	Japonica 9804, Rxo1, X. oryzae pv. oryzicola	1.59	6.95E-07
GSE33411	IR24, control	IR24, Xanthomonas oryzae pv. oryzae 12 h	3.54	1.64E-17
GSE33411	IR24, control	IR24, Xanthomonas oryzae pv. oryzae 6 h	1.67	8.13E-09
GSE33411	IR24, control	IR24, Xanthomonas oryzae pv. oryzae 3 h	3.55	7.88E-17
GSE33411	IRBB5, control	IRBB5, Xanthomonas oryzae pv. oryzae 12 h	3.33	8.15E-17
GSE33411	IRBB5, control	IRBB5, Xanthomonas oryzae pv. oryzae 6 h	1.70	5.06E-09
GSE33411	IRBB5, control	IRBB5, Xanthomonas oryzae pv. oryzae 3 h	3.38	2.51E-16
GSE33411	IRBB7, control	IRBB7, Xanthomonas oryzae pv. oryzae 12 h	3.17	2.41E-16
GSE33411	IRBB7, control	IRBB7, Xanthomonas oryzae pv. oryzae 6 h	1.71	4.33E-09
GSE33411	IRBB7, control	IRBB7, Xanthomonas oryzae pv. oryzae 3 h	3.21	6.51E-16
GSE62894	Nipponbare, Pish, water 2 d	Nipponbare, Pish, Magnaporthe oryzae Kyu77-07A 2 d	1.97	3.83E-03
GSE62894	Nipponbare, Pish, water 3 d	Nipponbare, Pish, Magnaporthe oryzae Kyu77-07A 3 d	2.55	2.77E-04
GSE62894	Nipponbare, pish, water 3 d	Nipponbare, pish, Magnaporthe oryzae Kyu77-07A 3 d	3.03	2.77E-05
GSE7256	Nipponbare, Mock 4 d	Nipponbare, Magnaporthe grisea FR13 5 d	2.22	3.30E-03