gene detail

Gene description

TAIR ID: AT5G63860

Short description: Regulator of chromosome condensation (RCC1) family protein

Pathogen responsiveness: -1.95

General responsiveness: -1.46

Orthologous

Rice:

OS04G0435700

Maize:

GRMZM2G003565

Wheat: No orthologous gene

GO biological process

response to UV, entrainment of circadian clock, protein-chromophore linkage, protein homodimerization activity, response to UV-B

GO cellular component

nucleus, cytoplasm, chromatin, cytosol

GO molecular function

protein binding, identical protein binding, guanyl-nucleotide exchange factor activity

Protein domain

Pfam	PF00415, Regulator of chromosome condensation (RCC1) repeat

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT1G24260

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 9 (Top20%)

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view
GSE26679_EDR1_GC  view

Differentially expressed condition

5 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	1.58	3.19E-08
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	1.72	8.60E-09
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	2.07	1.81E-10
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.64	1.52E-02
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.76	6.13E-03