Gene: AT5G63420
     

Gene description


TAIR ID: AT5G63420

Short description: RNA-metabolising metallo-beta-lactamase family protein

Pathogen responsiveness: -0.54

General responsiveness: -0.40

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G103315  

Wheat: No orthologous gene

GO biological process


chloroplast organization, longitudinal axis specification, embryo development ending in seed dormancy, auxin transport


GO cellular component


chloroplast


GO molecular function


catalytic activity


Protein domain


PfamPF13837, Myb/SANT-like DNA-binding domain
PfamPF12706, Beta-lactamase superfamily domain
PfamPF07521, Zn-dependent metallo-hydrolase RNA specificity domain
SMARTSM00849, Lactamase_B

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G61850

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 1

click to view PPI network

Differentially expressed condition


13 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h2.129.32E-09
GSE26679Col, WT, GC 0 hCol, WT, GC 36 h1.848.61E-08
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h2.437.50E-10
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h2.212.29E-09
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-2.351.43E-11
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h-2.014.77E-10
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h-2.205.37E-11
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h-1.501.10E-08
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-1.682.33E-09
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-1.751.06E-09
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h-2.027.85E-12
GSE56094Col, WT, control 10 hCol, WT, PstDC3000 10 h-1.737.31E-17
GSE56094Col, WT, control 11 hCol, WT, PstDC3000 11 h-1.591.88E-14






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