GO Enrichment Analysis of Co-expressed Genes with
AT5G63420
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
| 2 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 3 | GO:0000491: small nucleolar ribonucleoprotein complex assembly | 0.00E+00 |
| 4 | GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement | 0.00E+00 |
| 5 | GO:0046486: glycerolipid metabolic process | 0.00E+00 |
| 6 | GO:0090615: mitochondrial mRNA processing | 0.00E+00 |
| 7 | GO:0000492: box C/D snoRNP assembly | 0.00E+00 |
| 8 | GO:0006364: rRNA processing | 2.13E-06 |
| 9 | GO:0006401: RNA catabolic process | 6.54E-05 |
| 10 | GO:1900865: chloroplast RNA modification | 1.58E-04 |
| 11 | GO:0006949: syncytium formation | 1.87E-04 |
| 12 | GO:1901529: positive regulation of anion channel activity | 2.99E-04 |
| 13 | GO:0048731: system development | 2.99E-04 |
| 14 | GO:0006650: glycerophospholipid metabolic process | 2.99E-04 |
| 15 | GO:0050688: regulation of defense response to virus | 2.99E-04 |
| 16 | GO:0010541: acropetal auxin transport | 2.99E-04 |
| 17 | GO:0009220: pyrimidine ribonucleotide biosynthetic process | 2.99E-04 |
| 18 | GO:0006471: protein ADP-ribosylation | 4.92E-04 |
| 19 | GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement | 4.92E-04 |
| 20 | GO:0046168: glycerol-3-phosphate catabolic process | 4.92E-04 |
| 21 | GO:0006518: peptide metabolic process | 4.92E-04 |
| 22 | GO:0043481: anthocyanin accumulation in tissues in response to UV light | 7.04E-04 |
| 23 | GO:0006072: glycerol-3-phosphate metabolic process | 7.04E-04 |
| 24 | GO:0045017: glycerolipid biosynthetic process | 7.04E-04 |
| 25 | GO:0010371: regulation of gibberellin biosynthetic process | 7.04E-04 |
| 26 | GO:0010305: leaf vascular tissue pattern formation | 8.87E-04 |
| 27 | GO:1900864: mitochondrial RNA modification | 9.34E-04 |
| 28 | GO:0006221: pyrimidine nucleotide biosynthetic process | 9.34E-04 |
| 29 | GO:0051103: DNA ligation involved in DNA repair | 9.34E-04 |
| 30 | GO:0006273: lagging strand elongation | 9.34E-04 |
| 31 | GO:0044205: 'de novo' UMP biosynthetic process | 9.34E-04 |
| 32 | GO:0016123: xanthophyll biosynthetic process | 1.18E-03 |
| 33 | GO:0009616: virus induced gene silencing | 1.18E-03 |
| 34 | GO:0016120: carotene biosynthetic process | 1.18E-03 |
| 35 | GO:0048497: maintenance of floral organ identity | 1.18E-03 |
| 36 | GO:0009828: plant-type cell wall loosening | 1.30E-03 |
| 37 | GO:0016554: cytidine to uridine editing | 1.45E-03 |
| 38 | GO:0042793: transcription from plastid promoter | 1.45E-03 |
| 39 | GO:0006014: D-ribose metabolic process | 1.45E-03 |
| 40 | GO:1901259: chloroplast rRNA processing | 1.73E-03 |
| 41 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.73E-03 |
| 42 | GO:1900056: negative regulation of leaf senescence | 2.04E-03 |
| 43 | GO:0010050: vegetative phase change | 2.04E-03 |
| 44 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 2.04E-03 |
| 45 | GO:0009642: response to light intensity | 2.36E-03 |
| 46 | GO:0042255: ribosome assembly | 2.36E-03 |
| 47 | GO:0046620: regulation of organ growth | 2.36E-03 |
| 48 | GO:0006353: DNA-templated transcription, termination | 2.36E-03 |
| 49 | GO:0006402: mRNA catabolic process | 2.36E-03 |
| 50 | GO:0009827: plant-type cell wall modification | 2.69E-03 |
| 51 | GO:0019430: removal of superoxide radicals | 2.69E-03 |
| 52 | GO:0032544: plastid translation | 2.69E-03 |
| 53 | GO:0007389: pattern specification process | 2.69E-03 |
| 54 | GO:0009658: chloroplast organization | 2.82E-03 |
| 55 | GO:0048589: developmental growth | 3.04E-03 |
| 56 | GO:0031425: chloroplast RNA processing | 3.41E-03 |
| 57 | GO:0010267: production of ta-siRNAs involved in RNA interference | 3.41E-03 |
| 58 | GO:0048829: root cap development | 3.79E-03 |
| 59 | GO:0009641: shade avoidance | 3.79E-03 |
| 60 | GO:0009664: plant-type cell wall organization | 4.08E-03 |
| 61 | GO:0046856: phosphatidylinositol dephosphorylation | 4.18E-03 |
| 62 | GO:1903507: negative regulation of nucleic acid-templated transcription | 4.18E-03 |
| 63 | GO:0009750: response to fructose | 4.18E-03 |
| 64 | GO:0048765: root hair cell differentiation | 4.18E-03 |
| 65 | GO:0012501: programmed cell death | 4.58E-03 |
| 66 | GO:0045037: protein import into chloroplast stroma | 4.58E-03 |
| 67 | GO:0010152: pollen maturation | 4.58E-03 |
| 68 | GO:0010588: cotyledon vascular tissue pattern formation | 5.00E-03 |
| 69 | GO:0048367: shoot system development | 5.34E-03 |
| 70 | GO:0048768: root hair cell tip growth | 5.44E-03 |
| 71 | GO:0010540: basipetal auxin transport | 5.44E-03 |
| 72 | GO:0010025: wax biosynthetic process | 6.34E-03 |
| 73 | GO:0006863: purine nucleobase transport | 6.34E-03 |
| 74 | GO:2000377: regulation of reactive oxygen species metabolic process | 6.81E-03 |
| 75 | GO:0019953: sexual reproduction | 7.30E-03 |
| 76 | GO:0010431: seed maturation | 7.79E-03 |
| 77 | GO:0003333: amino acid transmembrane transport | 7.79E-03 |
| 78 | GO:0030245: cellulose catabolic process | 8.30E-03 |
| 79 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 8.30E-03 |
| 80 | GO:0009793: embryo development ending in seed dormancy | 8.60E-03 |
| 81 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 8.82E-03 |
| 82 | GO:0048443: stamen development | 9.35E-03 |
| 83 | GO:0010091: trichome branching | 9.35E-03 |
| 84 | GO:0042127: regulation of cell proliferation | 9.35E-03 |
| 85 | GO:0040008: regulation of growth | 1.03E-02 |
| 86 | GO:0042335: cuticle development | 1.04E-02 |
| 87 | GO:0080022: primary root development | 1.04E-02 |
| 88 | GO:0008033: tRNA processing | 1.04E-02 |
| 89 | GO:0010087: phloem or xylem histogenesis | 1.04E-02 |
| 90 | GO:0071472: cellular response to salt stress | 1.10E-02 |
| 91 | GO:0009451: RNA modification | 1.10E-02 |
| 92 | GO:0009749: response to glucose | 1.22E-02 |
| 93 | GO:0019252: starch biosynthetic process | 1.22E-02 |
| 94 | GO:0008654: phospholipid biosynthetic process | 1.22E-02 |
| 95 | GO:0080156: mitochondrial mRNA modification | 1.28E-02 |
| 96 | GO:0032502: developmental process | 1.34E-02 |
| 97 | GO:0030163: protein catabolic process | 1.40E-02 |
| 98 | GO:0051607: defense response to virus | 1.59E-02 |
| 99 | GO:0009826: unidimensional cell growth | 1.61E-02 |
| 100 | GO:0009627: systemic acquired resistance | 1.79E-02 |
| 101 | GO:0015995: chlorophyll biosynthetic process | 1.86E-02 |
| 102 | GO:0016311: dephosphorylation | 1.93E-02 |
| 103 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.14E-02 |
| 104 | GO:0006865: amino acid transport | 2.29E-02 |
| 105 | GO:0007165: signal transduction | 2.41E-02 |
| 106 | GO:0009744: response to sucrose | 2.84E-02 |
| 107 | GO:0048364: root development | 3.19E-02 |
| 108 | GO:0031347: regulation of defense response | 3.25E-02 |
| 109 | GO:0009736: cytokinin-activated signaling pathway | 3.51E-02 |
| 110 | GO:0048316: seed development | 4.04E-02 |
| 111 | GO:0006508: proteolysis | 4.24E-02 |
| 112 | GO:0009740: gibberellic acid mediated signaling pathway | 4.32E-02 |
| 113 | GO:0009624: response to nematode | 4.51E-02 |
| 114 | GO:0006396: RNA processing | 4.60E-02 |
| 115 | GO:0009742: brassinosteroid mediated signaling pathway | 4.70E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008859: exoribonuclease II activity | 0.00E+00 |
| 2 | GO:0004152: dihydroorotate dehydrogenase activity | 0.00E+00 |
| 3 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 1.30E-04 |
| 4 | GO:0000175: 3'-5'-exoribonuclease activity | 2.89E-04 |
| 5 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 4.92E-04 |
| 6 | GO:0009041: uridylate kinase activity | 7.04E-04 |
| 7 | GO:0010011: auxin binding | 9.34E-04 |
| 8 | GO:0010328: auxin influx transmembrane transporter activity | 9.34E-04 |
| 9 | GO:0003989: acetyl-CoA carboxylase activity | 1.18E-03 |
| 10 | GO:0003910: DNA ligase (ATP) activity | 1.18E-03 |
| 11 | GO:0003723: RNA binding | 1.24E-03 |
| 12 | GO:0004519: endonuclease activity | 1.30E-03 |
| 13 | GO:0004784: superoxide dismutase activity | 1.45E-03 |
| 14 | GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity | 1.45E-03 |
| 15 | GO:0003950: NAD+ ADP-ribosyltransferase activity | 1.73E-03 |
| 16 | GO:0004747: ribokinase activity | 1.73E-03 |
| 17 | GO:0030515: snoRNA binding | 2.04E-03 |
| 18 | GO:0008865: fructokinase activity | 2.36E-03 |
| 19 | GO:0004714: transmembrane receptor protein tyrosine kinase activity | 2.36E-03 |
| 20 | GO:0008173: RNA methyltransferase activity | 2.69E-03 |
| 21 | GO:0051287: NAD binding | 3.93E-03 |
| 22 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 4.58E-03 |
| 23 | GO:0003712: transcription cofactor activity | 5.88E-03 |
| 24 | GO:0004190: aspartic-type endopeptidase activity | 5.88E-03 |
| 25 | GO:0003779: actin binding | 6.03E-03 |
| 26 | GO:0003714: transcription corepressor activity | 6.81E-03 |
| 27 | GO:0005345: purine nucleobase transmembrane transporter activity | 7.30E-03 |
| 28 | GO:0004540: ribonuclease activity | 7.79E-03 |
| 29 | GO:0019843: rRNA binding | 7.79E-03 |
| 30 | GO:0008810: cellulase activity | 8.82E-03 |
| 31 | GO:0008289: lipid binding | 9.24E-03 |
| 32 | GO:0003727: single-stranded RNA binding | 9.35E-03 |
| 33 | GO:0005102: receptor binding | 9.90E-03 |
| 34 | GO:0004672: protein kinase activity | 1.43E-02 |
| 35 | GO:0016791: phosphatase activity | 1.46E-02 |
| 36 | GO:0005096: GTPase activator activity | 2.07E-02 |
| 37 | GO:0004222: metalloendopeptidase activity | 2.15E-02 |
| 38 | GO:0003993: acid phosphatase activity | 2.45E-02 |
| 39 | GO:0042803: protein homodimerization activity | 2.60E-02 |
| 40 | GO:0004722: protein serine/threonine phosphatase activity | 2.72E-02 |
| 41 | GO:0015293: symporter activity | 3.08E-02 |
| 42 | GO:0005215: transporter activity | 3.47E-02 |
| 43 | GO:0003690: double-stranded DNA binding | 3.60E-02 |
| 44 | GO:0015171: amino acid transmembrane transporter activity | 3.77E-02 |
| 45 | GO:0016887: ATPase activity | 4.72E-02 |