gene detail

Gene description

TAIR ID: AT5G63380

Short description: AMP-dependent synthetase and ligase family protein

Pathogen responsiveness: -1.28

General responsiveness: -2.09

Orthologous

Rice: No orthologous gene

Maize:

GRMZM5G805585

Wheat:

TAAFFX.65736.1.S1_AT

GO biological process

jasmonic acid biosynthetic process, oxylipin biosynthetic process

GO cellular component

peroxisome

GO molecular function

4-coumarate-CoA ligase activity, ligase activity, ATP binding, protein binding, fatty-acyl-CoA synthase activity

Protein domain

Pfam	PF13193, AMP-binding enzyme C-terminal domain
Pfam	PF00501, AMP-binding enzyme

Metabolic pathway

PWY-735: jasmonic acid biosynthesis

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT4G35040, AT2G16770

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

4 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-2.23	1.32E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-2.44	4.37E-14
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.66	8.03E-12
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.54	9.69E-05