co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G63380

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033494: ferulate metabolic process	0.00E+00
2	GO:0090470: shoot organ boundary specification	0.00E+00
3	GO:0061635: regulation of protein complex stability	0.00E+00
4	GO:0016553: base conversion or substitution editing	0.00E+00
5	GO:0042493: response to drug	0.00E+00
6	GO:0006399: tRNA metabolic process	0.00E+00
7	GO:0009773: photosynthetic electron transport in photosystem I	2.86E-07
8	GO:0090391: granum assembly	8.63E-06
9	GO:0015979: photosynthesis	1.01E-05
10	GO:0015995: chlorophyll biosynthetic process	3.56E-05
11	GO:0009913: epidermal cell differentiation	8.46E-05
12	GO:0009735: response to cytokinin	9.05E-05
13	GO:0042335: cuticle development	1.49E-04
14	GO:0010196: nonphotochemical quenching	1.54E-04
15	GO:0006400: tRNA modification	1.54E-04
16	GO:0048564: photosystem I assembly	1.97E-04
17	GO:0051180: vitamin transport	2.25E-04
18	GO:0030974: thiamine pyrophosphate transport	2.25E-04
19	GO:0043489: RNA stabilization	2.25E-04
20	GO:0071277: cellular response to calcium ion	2.25E-04
21	GO:0042371: vitamin K biosynthetic process	2.25E-04
22	GO:0043686: co-translational protein modification	2.25E-04
23	GO:0005991: trehalose metabolic process	2.25E-04
24	GO:0071588: hydrogen peroxide mediated signaling pathway	2.25E-04
25	GO:0048829: root cap development	4.12E-04
26	GO:0010115: regulation of abscisic acid biosynthetic process	5.00E-04
27	GO:0015893: drug transport	5.00E-04
28	GO:0001736: establishment of planar polarity	5.00E-04
29	GO:0010024: phytochromobilin biosynthetic process	5.00E-04
30	GO:0010143: cutin biosynthetic process	6.96E-04
31	GO:0009637: response to blue light	6.99E-04
32	GO:0015714: phosphoenolpyruvate transport	8.13E-04
33	GO:0010581: regulation of starch biosynthetic process	8.13E-04
34	GO:0006788: heme oxidation	8.13E-04
35	GO:0009768: photosynthesis, light harvesting in photosystem I	1.05E-03
36	GO:0003333: amino acid transmembrane transport	1.15E-03
37	GO:0009650: UV protection	1.16E-03
38	GO:2001141: regulation of RNA biosynthetic process	1.16E-03
39	GO:0010371: regulation of gibberellin biosynthetic process	1.16E-03
40	GO:0009152: purine ribonucleotide biosynthetic process	1.16E-03
41	GO:0046653: tetrahydrofolate metabolic process	1.16E-03
42	GO:0009658: chloroplast organization	1.49E-03
43	GO:0015994: chlorophyll metabolic process	1.54E-03
44	GO:0031122: cytoplasmic microtubule organization	1.54E-03
45	GO:0015713: phosphoglycerate transport	1.54E-03
46	GO:0006546: glycine catabolic process	1.54E-03
47	GO:0010021: amylopectin biosynthetic process	1.54E-03
48	GO:0045727: positive regulation of translation	1.54E-03
49	GO:0010182: sugar mediated signaling pathway	1.87E-03
50	GO:0030308: negative regulation of cell growth	1.97E-03
51	GO:0080110: sporopollenin biosynthetic process	1.97E-03
52	GO:0016120: carotene biosynthetic process	1.97E-03
53	GO:0006564: L-serine biosynthetic process	1.97E-03
54	GO:0010236: plastoquinone biosynthetic process	1.97E-03
55	GO:0048497: maintenance of floral organ identity	1.97E-03
56	GO:0031365: N-terminal protein amino acid modification	1.97E-03
57	GO:0006461: protein complex assembly	1.97E-03
58	GO:0009107: lipoate biosynthetic process	1.97E-03
59	GO:0006561: proline biosynthetic process	2.43E-03
60	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.43E-03
61	GO:0000470: maturation of LSU-rRNA	2.43E-03
62	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.91E-03
63	GO:0010189: vitamin E biosynthetic process	2.91E-03
64	GO:0010019: chloroplast-nucleus signaling pathway	2.91E-03
65	GO:0006869: lipid transport	3.14E-03
66	GO:0010027: thylakoid membrane organization	3.31E-03
67	GO:0042744: hydrogen peroxide catabolic process	3.40E-03
68	GO:0009645: response to low light intensity stimulus	3.43E-03
69	GO:0009395: phospholipid catabolic process	3.43E-03
70	GO:0009772: photosynthetic electron transport in photosystem II	3.43E-03
71	GO:0016042: lipid catabolic process	3.59E-03
72	GO:0008610: lipid biosynthetic process	3.98E-03
73	GO:0005978: glycogen biosynthetic process	3.98E-03
74	GO:0030091: protein repair	3.98E-03
75	GO:0070413: trehalose metabolism in response to stress	3.98E-03
76	GO:0009704: de-etiolation	3.98E-03
77	GO:0055075: potassium ion homeostasis	3.98E-03
78	GO:0045292: mRNA cis splicing, via spliceosome	3.98E-03
79	GO:0009409: response to cold	4.10E-03
80	GO:0018298: protein-chromophore linkage	4.31E-03
81	GO:0019430: removal of superoxide radicals	4.56E-03
82	GO:0009657: plastid organization	4.56E-03
83	GO:0032544: plastid translation	4.56E-03
84	GO:0071482: cellular response to light stimulus	4.56E-03
85	GO:0006810: transport	4.80E-03
86	GO:0009631: cold acclimation	4.98E-03
87	GO:0005975: carbohydrate metabolic process	5.13E-03
88	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.16E-03
89	GO:0034765: regulation of ion transmembrane transport	5.16E-03
90	GO:0090333: regulation of stomatal closure	5.16E-03
91	GO:0000373: Group II intron splicing	5.16E-03
92	GO:0006865: amino acid transport	5.22E-03
93	GO:0010380: regulation of chlorophyll biosynthetic process	5.79E-03
94	GO:0005982: starch metabolic process	5.79E-03
95	GO:0006839: mitochondrial transport	6.22E-03
96	GO:0019538: protein metabolic process	6.45E-03
97	GO:0009688: abscisic acid biosynthetic process	6.45E-03
98	GO:0010114: response to red light	7.04E-03
99	GO:0008285: negative regulation of cell proliferation	7.13E-03
100	GO:0043085: positive regulation of catalytic activity	7.13E-03
101	GO:0006352: DNA-templated transcription, initiation	7.13E-03
102	GO:0009750: response to fructose	7.13E-03
103	GO:0048765: root hair cell differentiation	7.13E-03
104	GO:0000038: very long-chain fatty acid metabolic process	7.13E-03
105	GO:0016024: CDP-diacylglycerol biosynthetic process	7.84E-03
106	GO:0015706: nitrate transport	7.84E-03
107	GO:0010628: positive regulation of gene expression	8.57E-03
108	GO:0006006: glucose metabolic process	8.57E-03
109	GO:0009718: anthocyanin-containing compound biosynthetic process	8.57E-03
110	GO:0019253: reductive pentose-phosphate cycle	9.33E-03
111	GO:0010167: response to nitrate	1.01E-02
112	GO:0019762: glucosinolate catabolic process	1.09E-02
113	GO:0045893: positive regulation of transcription, DNA-templated	1.10E-02
114	GO:0005992: trehalose biosynthetic process	1.17E-02
115	GO:0007017: microtubule-based process	1.26E-02
116	GO:0010073: meristem maintenance	1.26E-02
117	GO:0016998: cell wall macromolecule catabolic process	1.34E-02
118	GO:0030245: cellulose catabolic process	1.43E-02
119	GO:0009411: response to UV	1.53E-02
120	GO:0010227: floral organ abscission	1.53E-02
121	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.53E-02
122	GO:0032259: methylation	1.55E-02
123	GO:0019722: calcium-mediated signaling	1.62E-02
124	GO:0010584: pollen exine formation	1.62E-02
125	GO:0016117: carotenoid biosynthetic process	1.71E-02
126	GO:0042391: regulation of membrane potential	1.81E-02
127	GO:0080022: primary root development	1.81E-02
128	GO:0000413: protein peptidyl-prolyl isomerization	1.81E-02
129	GO:0055114: oxidation-reduction process	1.82E-02
130	GO:0008152: metabolic process	1.85E-02
131	GO:0009958: positive gravitropism	1.91E-02
132	GO:0048544: recognition of pollen	2.01E-02
133	GO:0015986: ATP synthesis coupled proton transport	2.01E-02
134	GO:0048825: cotyledon development	2.11E-02
135	GO:0019252: starch biosynthetic process	2.11E-02
136	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.22E-02
137	GO:0000302: response to reactive oxygen species	2.22E-02
138	GO:0010150: leaf senescence	2.35E-02
139	GO:0009451: RNA modification	2.40E-02
140	GO:1901657: glycosyl compound metabolic process	2.43E-02
141	GO:0009734: auxin-activated signaling pathway	2.51E-02
142	GO:0009828: plant-type cell wall loosening	2.54E-02
143	GO:0071805: potassium ion transmembrane transport	2.65E-02
144	GO:0007267: cell-cell signaling	2.65E-02
145	GO:0009627: systemic acquired resistance	3.12E-02
146	GO:0010411: xyloglucan metabolic process	3.24E-02
147	GO:0048573: photoperiodism, flowering	3.24E-02
148	GO:0009416: response to light stimulus	3.35E-02
149	GO:0016311: dephosphorylation	3.36E-02
150	GO:0010311: lateral root formation	3.61E-02
151	GO:0009832: plant-type cell wall biogenesis	3.61E-02
152	GO:0000160: phosphorelay signal transduction system	3.61E-02
153	GO:0009407: toxin catabolic process	3.73E-02
154	GO:0010218: response to far red light	3.73E-02
155	GO:0045087: innate immune response	4.12E-02
156	GO:0009853: photorespiration	4.12E-02
157	GO:0034599: cellular response to oxidative stress	4.25E-02
158	GO:0080167: response to karrikin	4.49E-02
159	GO:0009640: photomorphogenesis	4.93E-02
160	GO:0009926: auxin polar transport	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
2	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
3	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
4	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
5	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
6	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
7	GO:0045436: lycopene beta cyclase activity	0.00E+00
8	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
9	GO:0016788: hydrolase activity, acting on ester bonds	3.47E-06
10	GO:0008266: poly(U) RNA binding	3.47E-05
11	GO:0010328: auxin influx transmembrane transporter activity	3.60E-05
12	GO:0019843: rRNA binding	5.79E-05
13	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	2.25E-04
14	GO:0008568: microtubule-severing ATPase activity	2.25E-04
15	GO:0042586: peptide deformylase activity	2.25E-04
16	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.25E-04
17	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	2.25E-04
18	GO:0030794: (S)-coclaurine-N-methyltransferase activity	2.25E-04
19	GO:0090422: thiamine pyrophosphate transporter activity	2.25E-04
20	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.34E-04
21	GO:0003844: 1,4-alpha-glucan branching enzyme activity	5.00E-04
22	GO:0016630: protochlorophyllide reductase activity	5.00E-04
23	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	5.00E-04
24	GO:0047746: chlorophyllase activity	5.00E-04
25	GO:0004617: phosphoglycerate dehydrogenase activity	5.00E-04
26	GO:0004565: beta-galactosidase activity	6.19E-04
27	GO:0043169: cation binding	8.13E-04
28	GO:0050734: hydroxycinnamoyltransferase activity	8.13E-04
29	GO:0016992: lipoate synthase activity	8.13E-04
30	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	8.13E-04
31	GO:0008864: formyltetrahydrofolate deformylase activity	8.13E-04
32	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	8.13E-04
33	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	8.13E-04
34	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	8.13E-04
35	GO:0031409: pigment binding	8.64E-04
36	GO:0015293: symporter activity	1.11E-03
37	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.16E-03
38	GO:0016851: magnesium chelatase activity	1.16E-03
39	GO:0001872: (1->3)-beta-D-glucan binding	1.16E-03
40	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.16E-03
41	GO:0008289: lipid binding	1.48E-03
42	GO:0016987: sigma factor activity	1.54E-03
43	GO:0004392: heme oxygenase (decyclizing) activity	1.54E-03
44	GO:0015120: phosphoglycerate transmembrane transporter activity	1.54E-03
45	GO:0004659: prenyltransferase activity	1.54E-03
46	GO:0001053: plastid sigma factor activity	1.54E-03
47	GO:0010011: auxin binding	1.54E-03
48	GO:0003959: NADPH dehydrogenase activity	1.97E-03
49	GO:0050662: coenzyme binding	2.00E-03
50	GO:0052689: carboxylic ester hydrolase activity	2.41E-03
51	GO:0004130: cytochrome-c peroxidase activity	2.43E-03
52	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.43E-03
53	GO:0016688: L-ascorbate peroxidase activity	2.43E-03
54	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.43E-03
55	GO:0005215: transporter activity	2.75E-03
56	GO:0016791: phosphatase activity	2.78E-03
57	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.91E-03
58	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.91E-03
59	GO:0005242: inward rectifier potassium channel activity	2.91E-03
60	GO:0051920: peroxiredoxin activity	2.91E-03
61	GO:0016597: amino acid binding	3.13E-03
62	GO:0016168: chlorophyll binding	3.50E-03
63	GO:0052747: sinapyl alcohol dehydrogenase activity	3.98E-03
64	GO:0004033: aldo-keto reductase (NADP) activity	3.98E-03
65	GO:0016209: antioxidant activity	3.98E-03
66	GO:0003993: acid phosphatase activity	5.71E-03
67	GO:0047617: acyl-CoA hydrolase activity	5.79E-03
68	GO:0015112: nitrate transmembrane transporter activity	5.79E-03
69	GO:0030234: enzyme regulator activity	6.45E-03
70	GO:0008047: enzyme activator activity	6.45E-03
71	GO:0008168: methyltransferase activity	7.21E-03
72	GO:0045551: cinnamyl-alcohol dehydrogenase activity	7.84E-03
73	GO:0051287: NAD binding	8.53E-03
74	GO:0004022: alcohol dehydrogenase (NAD) activity	8.57E-03
75	GO:0015171: amino acid transmembrane transporter activity	1.05E-02
76	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.09E-02
77	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.09E-02
78	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.09E-02
79	GO:0005528: FK506 binding	1.17E-02
80	GO:0016746: transferase activity, transferring acyl groups	1.40E-02
81	GO:0030246: carbohydrate binding	1.40E-02
82	GO:0008810: cellulase activity	1.53E-02
83	GO:0030551: cyclic nucleotide binding	1.81E-02
84	GO:0005249: voltage-gated potassium channel activity	1.81E-02
85	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.91E-02
86	GO:0004791: thioredoxin-disulfide reductase activity	2.01E-02
87	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.22E-02
88	GO:0004518: nuclease activity	2.32E-02
89	GO:0000156: phosphorelay response regulator activity	2.43E-02
90	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.43E-02
91	GO:0005200: structural constituent of cytoskeleton	2.65E-02
92	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.12E-02
93	GO:0102483: scopolin beta-glucosidase activity	3.24E-02
94	GO:0030247: polysaccharide binding	3.24E-02
95	GO:0004683: calmodulin-dependent protein kinase activity	3.24E-02
96	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.24E-02
97	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.36E-02
98	GO:0004601: peroxidase activity	3.63E-02
99	GO:0016491: oxidoreductase activity	3.85E-02
100	GO:0008422: beta-glucosidase activity	4.39E-02
101	GO:0051539: 4 iron, 4 sulfur cluster binding	4.52E-02
102	GO:0050661: NADP binding	4.52E-02
103	GO:0004364: glutathione transferase activity	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009507: chloroplast	8.57E-23
3	GO:0009535: chloroplast thylakoid membrane	6.71E-14
4	GO:0009941: chloroplast envelope	5.38E-12
5	GO:0009534: chloroplast thylakoid	1.49E-11
6	GO:0009570: chloroplast stroma	7.88E-10
7	GO:0009579: thylakoid	3.64E-08
8	GO:0048046: apoplast	1.84E-07
9	GO:0009543: chloroplast thylakoid lumen	5.79E-05
10	GO:0031977: thylakoid lumen	9.45E-05
11	GO:0046658: anchored component of plasma membrane	2.06E-04
12	GO:0009782: photosystem I antenna complex	2.25E-04
13	GO:0009547: plastid ribosome	2.25E-04
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.95E-04
15	GO:0010287: plastoglobule	4.36E-04
16	GO:0030095: chloroplast photosystem II	6.96E-04
17	GO:0030076: light-harvesting complex	7.77E-04
18	GO:0010007: magnesium chelatase complex	8.13E-04
19	GO:0016020: membrane	1.05E-03
20	GO:0015630: microtubule cytoskeleton	1.16E-03
21	GO:0005618: cell wall	1.67E-03
22	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.43E-03
23	GO:0010319: stromule	2.95E-03
24	GO:0009986: cell surface	3.43E-03
25	GO:0009533: chloroplast stromal thylakoid	3.43E-03
26	GO:0009505: plant-type cell wall	3.52E-03
27	GO:0009501: amyloplast	3.98E-03
28	GO:0031225: anchored component of membrane	4.95E-03
29	GO:0000311: plastid large ribosomal subunit	7.84E-03
30	GO:0005578: proteinaceous extracellular matrix	8.57E-03
31	GO:0000312: plastid small ribosomal subunit	9.33E-03
32	GO:0031969: chloroplast membrane	9.96E-03
33	GO:0009654: photosystem II oxygen evolving complex	1.26E-02
34	GO:0015935: small ribosomal subunit	1.34E-02
35	GO:0009706: chloroplast inner membrane	1.36E-02
36	GO:0005886: plasma membrane	2.00E-02
37	GO:0009522: photosystem I	2.01E-02
38	GO:0009523: photosystem II	2.11E-02
39	GO:0019898: extrinsic component of membrane	2.11E-02
40	GO:0030529: intracellular ribonucleoprotein complex	2.88E-02