Gene: AT5G63110
     


Gene description


TAIR ID: AT5G63110

Short description: histone deacetylase 6

Pathogen responsiveness: -2.30

General responsiveness: -3.48

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G136067  

Wheat: No orthologous gene

GO biological process


response to salt stress, histone deacetylation, vegetative to reproductive phase transition of meristem, regulation of transcription, DNA-templated, response to abscisic acid, gene silencing, transcription, posttranscriptional gene silencing, seed maturation, embryo development ending in seed dormancy


GO cellular component


nucleolus, nucleus, chloroplast envelope


GO molecular function


protein binding, histone deacetylase activity


Protein domain


PfamPF00850, Histone deacetylase domain

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT1G51600, AT4G36990

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 19 (Top10%)

click to view PPI network

Coexpression network

GSE5686_WT_GO  view

Differentially expressed condition


2 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE52979Col, WT, acetoneCol, WT, acetone flg22_2 h-3.104.43E-03
GSE52979Col, WT, oxo_C14_HSLCol, WT, oxo_C14_HSL flg22_2 h-2.541.51E-02






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