gene detail

Gene description

TAIR ID: AT5G62540

Short description: ubiquitin-conjugating enzyme 3

Pathogen responsiveness: -1.54

General responsiveness: -1.62

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

protein polyubiquitination, histone ubiquitination, ubiquitin-dependent protein catabolic process, proteasome-mediated ubiquitin-dependent protein catabolic process, DNA repair

GO cellular component

nucleus, cytoplasm

GO molecular function

ATP binding, ubiquitin protein ligase binding, ubiquitin-protein transferase activity, ubiquitin protein ligase activity

Protein domain

Pfam	PF00179, Ubiquitin-conjugating enzyme
SMART	SM00212, UBCc

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath04120: Ubiquitin mediated proteolysis

Transcriptional regulation

Regulator:
AT3G24050, AT5G61850

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

5 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, PstDC3000 12 h	-1.93	2.49E-07
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	1.58	2.86E-12
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	1.51	2.52E-03
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	1.82	6.51E-05
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	1.95	4.65E-05