Gene: AT5G61780
     


Gene description


TAIR ID: AT5G61780

Short description: TUDOR-SN protein 2

Pathogen responsiveness: -1.62

General responsiveness: -0.94

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


cellular response to heat, gibberellin biosynthetic process, mRNA catabolic process, mRNA processing, response to cadmium ion, positive regulation of gibberellin biosynthetic process, response to salt stress, seed germination, gene silencing by RNA, protein secretion


GO cellular component


RISC complex, plasmodesma, cytoplasm, nuclear envelope, cytoplasmic stress granule, cytosol, perinuclear region of cytoplasm, P-body, endoplasmic reticulum


GO molecular function


RNA binding, nuclease activity


Protein domain


PfamPF00567, Tudor domain
PfamPF00565, Staphylococcal nuclease homologue
SMARTSM00333, TUDOR
SMARTSM00318, SNc

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT2G02820, AT4G36990, AT1G14350

Target:
none

Protein-protein interaction network


No Interactor


Differentially expressed condition


3 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE37269Ei2, WT, controlEi2, WT, TEV 21 d-2.131.02E-02
GSE45214Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h1.542.24E-09
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h1.741.42E-10






Copyright © 2017 Ziding Zhang's Lab - China Agricultural University. All Rights Reserved.