gene detail

Gene description

TAIR ID: AT5G60540

Short description: pyridoxine biosynthesis 2

Pathogen responsiveness: -1.79

General responsiveness: -1.49

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G023528

Wheat:

TA.6847.3.A1_X_AT

GO biological process

vitamin B6 biosynthetic process, pyridoxal phosphate biosynthetic process, pyridoxine biosynthetic process, pyridoxine metabolic process, glutamine metabolic process, embryo development ending in seed dormancy

GO cellular component

glutaminase complex, cytosol, cytoplasm

GO molecular function

glutaminase activity, pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity, protein heterodimerization activity

Protein domain

Pfam	PF01174, SNO glutamine amidotransferase family

Metabolic pathway

PWY-6466: pyridoxal 5'-phosphate biosynthesis II
GLUTAMINDEG-PWY: glutamine degradation I
CITRULBIO-PWY: citrulline biosynthesis
PWY-5004: superpathway of citrulline metabolism

KEGG pathway

PATH:ath00750: Vitamin B6 metabolism

Transcriptional regulation

Regulator:
AT5G13790, AT1G24260

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 7

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view

Differentially expressed condition

7 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	1.72	1.51E-08
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	1.52	9.37E-08
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	1.64	2.89E-08
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	1.79	3.70E-09
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.59	1.84E-02
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.80	5.08E-03
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	1.92	5.12E-07