gene detail

Gene description

TAIR ID: AT5G58760

Short description: damaged DNA binding 2

Pathogen responsiveness: -1.62

General responsiveness: -0.44

Orthologous

Rice: No orthologous gene

Maize:

Wheat: No orthologous gene

GO biological process

DNA repair, protein ubiquitination, response to UV-B

GO cellular component

nucleus, Cul4-RING E3 ubiquitin ligase complex

GO molecular function

protein binding, zinc ion binding

Protein domain

Pfam	PF00400, WD domain, G-beta repeat
SMART	SM00320, WD40

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Transcriptional regulation

Regulator:
AT1G51600

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2 view
GSE26679_EDR1_GC view

Differentially expressed condition

7 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, Alternaria brassicicola 3 d	-1.51	5.69E-04
GSE17464	Penta, control	Penta, Alternaria brassicicola 3 d	-1.96	7.84E-06
GSE17464	Penta, control	Penta, PstDC3000 12 h	-1.84	2.33E-05
GSE17464	Penta, control	Penta, Flg22 2 h	-1.74	6.33E-05
GSE17464	Penta, control	Penta, Flg22 2 h	-1.52	3.93E-04
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	1.67	1.66E-02
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	-1.64	2.84E-04