Gene: AT5G57160
     


Gene description


TAIR ID: AT5G57160

Short description: DNA ligase IV

Pathogen responsiveness: -2.76

General responsiveness: -2.25

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat:

TAAFFX.12124.1.S1_AT  


GO biological process


DNA ligation involved in DNA repair, DNA biosynthetic process, double-strand break repair via nonhomologous end joining, double-strand break repair, cellular response to DNA damage stimulus, response to X-ray, nucleotide-excision repair, DNA gap filling, DNA recombination


GO cellular component


plasmodesma, DNA ligase IV complex, cytoplasm, nucleus, apoplast


GO molecular function


protein binding, DNA ligase (ATP) activity, ATP binding, metal ion binding, DNA binding


Protein domain


PfamPF01068, ATP dependent DNA ligase domain
PfamPF04675, DNA ligase N terminus
PfamPF16589, BRCT domain, a BRCA1 C-terminus domain
PfamPF04679, ATP dependent DNA ligase C terminal region
SMARTSM00292, BRCT

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT3G27920, AT5G61850

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 3

click to view PPI network

Differentially expressed condition


Copyright © 2017 Ziding Zhang's Lab - China Agricultural University. All Rights Reserved.