Gene: AT5G57030
     

Gene description


TAIR ID: AT5G57030

Short description: Lycopene beta/epsilon cyclase protein

Pathogen responsiveness: 0.23

General responsiveness: 1.30

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


carotene biosynthetic process, photosynthesis, light harvesting, xanthophyll biosynthetic process, carotenoid biosynthetic process


GO cellular component


chloroplast, integral component of membrane, chloroplast membrane


GO molecular function


lycopene epsilon cyclase activity, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen


Protein domain


PfamPF05834, Lycopene cyclase protein

Transcriptional regulation


Regulator:
AT5G13790, AT2G22300

Target:
none

Protein-protein interaction network


No Interactor


Differentially expressed condition


28 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE12856Col, WT, controlCol, WT, Bg h-1.724.02E-08
GSE12856Col, ataf1, controlCol, ataf1, Bg h-1.959.57E-09
GSE17500Col, 35S:AFB1, control 0 hCol, 35S:AFB1, PstDC3000 24 h-1.862.05E-04
GSE17500Col, WT, control 0 hCol, WT, PstDC3000 24 h-2.143.82E-05
GSE17500Col, miR393, control 0 hCol, miR393, PstDC3000 24 h-2.253.92E-05
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h-3.061.46E-10
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-2.291.39E-12
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h-1.691.53E-10
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h-2.291.58E-12
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-2.078.05E-12
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-2.368.78E-13
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h-2.222.02E-12
GSE50526Col, WT, mock 24 hCol, WT, A. brassicicola 24 h-1.814.15E-02
GSE50526Col, WT, mock 9 hCol, WT, A. brassicicola 9 h-1.871.92E-02
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h-1.906.13E-05
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h-2.041.28E-06
GSE56094Col, WT, control 10 hCol, WT, PstDC3000 10 h-2.475.12E-16
GSE56094Col, WT, control 10 hCol, WT, hrpA- 10 h-1.655.49E-08
GSE56094Col, WT, control 11 hCol, WT, PstDC3000 11 h-2.193.62E-13
GSE56094Col, WT, control 12 hCol, WT, PstDC3000 12 h-2.251.27E-13
GSE56094Col, WT, control 13 hCol, WT, PstDC3000 13 h-2.255.41E-14
GSE56094Col, WT, control 7 hCol, WT, PstDC3000 7 h-1.759.49E-09
GSE56094Col, WT, control 8 hCol, WT, PstDC3000 8 h-2.093.99E-12
GSE56094Col, WT, control 8 hCol, WT, hrpA- 8 h-1.862.03E-09
GSE56094Col, WT, control 9 hCol, WT, PstDC3000 9 h-1.845.48E-10
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h-1.632.74E-03
GSE6556Col, gh3.5, controlCol, gh3.5, PstDC3000 AvrRpt2 48 h-1.602.74E-03
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 6 h-1.543.41E-02






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