co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G57030

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
2	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
3	GO:0098586: cellular response to virus	0.00E+00
4	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
5	GO:0033231: carbohydrate export	0.00E+00
6	GO:0007037: vacuolar phosphate transport	0.00E+00
7	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
8	GO:0042817: pyridoxal metabolic process	0.00E+00
9	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
10	GO:0051246: regulation of protein metabolic process	0.00E+00
11	GO:0008298: intracellular mRNA localization	0.00E+00
12	GO:0005997: xylulose metabolic process	0.00E+00
13	GO:0006907: pinocytosis	0.00E+00
14	GO:0006399: tRNA metabolic process	0.00E+00
15	GO:0019685: photosynthesis, dark reaction	0.00E+00
16	GO:2001141: regulation of RNA biosynthetic process	3.85E-07
17	GO:0071482: cellular response to light stimulus	4.71E-07
18	GO:0009658: chloroplast organization	7.64E-07
19	GO:0080005: photosystem stoichiometry adjustment	8.17E-06
20	GO:0000256: allantoin catabolic process	8.17E-06
21	GO:0048564: photosystem I assembly	1.92E-05
22	GO:0009657: plastid organization	2.73E-05
23	GO:0010136: ureide catabolic process	2.82E-05
24	GO:0006145: purine nucleobase catabolic process	6.13E-05
25	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	6.13E-05
26	GO:0006352: DNA-templated transcription, initiation	8.03E-05
27	GO:0031935: regulation of chromatin silencing	1.07E-04
28	GO:0015979: photosynthesis	1.60E-04
29	GO:0045038: protein import into chloroplast thylakoid membrane	1.66E-04
30	GO:0016123: xanthophyll biosynthetic process	1.66E-04
31	GO:0015995: chlorophyll biosynthetic process	2.01E-04
32	GO:0010190: cytochrome b6f complex assembly	2.37E-04
33	GO:0006419: alanyl-tRNA aminoacylation	4.29E-04
34	GO:1902334: fructose export from vacuole to cytoplasm	4.29E-04
35	GO:0010362: negative regulation of anion channel activity by blue light	4.29E-04
36	GO:0015755: fructose transport	4.29E-04
37	GO:0019646: aerobic electron transport chain	4.29E-04
38	GO:0031426: polycistronic mRNA processing	4.29E-04
39	GO:0046900: tetrahydrofolylpolyglutamate metabolic process	4.29E-04
40	GO:1904966: positive regulation of vitamin E biosynthetic process	4.29E-04
41	GO:0033388: putrescine biosynthetic process from arginine	4.29E-04
42	GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.29E-04
43	GO:1904964: positive regulation of phytol biosynthetic process	4.29E-04
44	GO:0042371: vitamin K biosynthetic process	4.29E-04
45	GO:0071461: cellular response to redox state	4.29E-04
46	GO:0006436: tryptophanyl-tRNA aminoacylation	4.29E-04
47	GO:1902458: positive regulation of stomatal opening	4.29E-04
48	GO:0009451: RNA modification	7.43E-04
49	GO:0000373: Group II intron splicing	7.50E-04
50	GO:1900426: positive regulation of defense response to bacterium	8.83E-04
51	GO:0010275: NAD(P)H dehydrogenase complex assembly	9.27E-04
52	GO:0006739: NADP metabolic process	9.27E-04
53	GO:0046741: transport of virus in host, tissue to tissue	9.27E-04
54	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	9.27E-04
55	GO:0048255: mRNA stabilization	9.27E-04
56	GO:1902326: positive regulation of chlorophyll biosynthetic process	9.27E-04
57	GO:0030187: melatonin biosynthetic process	9.27E-04
58	GO:0034755: iron ion transmembrane transport	9.27E-04
59	GO:0006435: threonyl-tRNA aminoacylation	9.27E-04
60	GO:0009446: putrescine biosynthetic process	9.27E-04
61	GO:0080183: response to photooxidative stress	9.27E-04
62	GO:1903426: regulation of reactive oxygen species biosynthetic process	9.27E-04
63	GO:0080185: effector dependent induction by symbiont of host immune response	9.27E-04
64	GO:0006790: sulfur compound metabolic process	1.35E-03
65	GO:0009405: pathogenesis	1.51E-03
66	GO:0006013: mannose metabolic process	1.51E-03
67	GO:0002230: positive regulation of defense response to virus by host	1.51E-03
68	GO:1901672: positive regulation of systemic acquired resistance	1.51E-03
69	GO:0009150: purine ribonucleotide metabolic process	1.51E-03
70	GO:0051604: protein maturation	1.51E-03
71	GO:0006696: ergosterol biosynthetic process	1.51E-03
72	GO:0009767: photosynthetic electron transport chain	1.54E-03
73	GO:0018298: protein-chromophore linkage	1.69E-03
74	GO:0010207: photosystem II assembly	1.73E-03
75	GO:0009793: embryo development ending in seed dormancy	1.95E-03
76	GO:0055114: oxidation-reduction process	1.96E-03
77	GO:0010239: chloroplast mRNA processing	2.18E-03
78	GO:0009052: pentose-phosphate shunt, non-oxidative branch	2.18E-03
79	GO:0033014: tetrapyrrole biosynthetic process	2.18E-03
80	GO:0090307: mitotic spindle assembly	2.18E-03
81	GO:0006809: nitric oxide biosynthetic process	2.18E-03
82	GO:0008615: pyridoxine biosynthetic process	2.18E-03
83	GO:0051016: barbed-end actin filament capping	2.18E-03
84	GO:0046739: transport of virus in multicellular host	2.18E-03
85	GO:0050482: arachidonic acid secretion	2.18E-03
86	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	2.18E-03
87	GO:0043572: plastid fission	2.18E-03
88	GO:0007017: microtubule-based process	2.65E-03
89	GO:0042274: ribosomal small subunit biogenesis	2.93E-03
90	GO:0031122: cytoplasmic microtubule organization	2.93E-03
91	GO:0006021: inositol biosynthetic process	2.93E-03
92	GO:0006734: NADH metabolic process	2.93E-03
93	GO:0009902: chloroplast relocation	2.93E-03
94	GO:0016226: iron-sulfur cluster assembly	3.19E-03
95	GO:0034052: positive regulation of plant-type hypersensitive response	3.76E-03
96	GO:0016558: protein import into peroxisome matrix	3.76E-03
97	GO:0016120: carotene biosynthetic process	3.76E-03
98	GO:0006282: regulation of DNA repair	3.76E-03
99	GO:0008033: tRNA processing	4.44E-03
100	GO:0006364: rRNA processing	4.64E-03
101	GO:0000741: karyogamy	4.65E-03
102	GO:0046855: inositol phosphate dephosphorylation	4.65E-03
103	GO:0009643: photosynthetic acclimation	4.65E-03
104	GO:0042549: photosystem II stabilization	4.65E-03
105	GO:0009791: post-embryonic development	5.52E-03
106	GO:0071470: cellular response to osmotic stress	5.60E-03
107	GO:0042372: phylloquinone biosynthetic process	5.60E-03
108	GO:0017148: negative regulation of translation	5.60E-03
109	GO:0010189: vitamin E biosynthetic process	5.60E-03
110	GO:0010019: chloroplast-nucleus signaling pathway	5.60E-03
111	GO:0010193: response to ozone	5.91E-03
112	GO:0048528: post-embryonic root development	6.62E-03
113	GO:0009772: photosynthetic electron transport in photosystem II	6.62E-03
114	GO:1900056: negative regulation of leaf senescence	6.62E-03
115	GO:0080111: DNA demethylation	6.62E-03
116	GO:0006400: tRNA modification	6.62E-03
117	GO:0006401: RNA catabolic process	6.62E-03
118	GO:0006402: mRNA catabolic process	7.71E-03
119	GO:0030091: protein repair	7.71E-03
120	GO:0009787: regulation of abscisic acid-activated signaling pathway	7.71E-03
121	GO:0042255: ribosome assembly	7.71E-03
122	GO:0006353: DNA-templated transcription, termination	7.71E-03
123	GO:2000070: regulation of response to water deprivation	7.71E-03
124	GO:0000105: histidine biosynthetic process	7.71E-03
125	GO:0006644: phospholipid metabolic process	7.71E-03
126	GO:0010027: thylakoid membrane organization	8.57E-03
127	GO:0032544: plastid translation	8.84E-03
128	GO:0009816: defense response to bacterium, incompatible interaction	9.07E-03
129	GO:0009051: pentose-phosphate shunt, oxidative branch	1.00E-02
130	GO:0090305: nucleic acid phosphodiester bond hydrolysis	1.00E-02
131	GO:0048507: meristem development	1.00E-02
132	GO:0006783: heme biosynthetic process	1.00E-02
133	GO:0009638: phototropism	1.13E-02
134	GO:0006779: porphyrin-containing compound biosynthetic process	1.13E-02
135	GO:0010380: regulation of chlorophyll biosynthetic process	1.13E-02
136	GO:0031425: chloroplast RNA processing	1.13E-02
137	GO:0006995: cellular response to nitrogen starvation	1.26E-02
138	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.26E-02
139	GO:0045036: protein targeting to chloroplast	1.26E-02
140	GO:0006259: DNA metabolic process	1.26E-02
141	GO:0007568: aging	1.30E-02
142	GO:0006265: DNA topological change	1.40E-02
143	GO:0009773: photosynthetic electron transport in photosystem I	1.40E-02
144	GO:0043085: positive regulation of catalytic activity	1.40E-02
145	GO:0006879: cellular iron ion homeostasis	1.40E-02
146	GO:0006415: translational termination	1.40E-02
147	GO:0009750: response to fructose	1.40E-02
148	GO:0009853: photorespiration	1.43E-02
149	GO:0009637: response to blue light	1.43E-02
150	GO:0007623: circadian rhythm	1.47E-02
151	GO:0005986: sucrose biosynthetic process	1.69E-02
152	GO:0006006: glucose metabolic process	1.69E-02
153	GO:0006807: nitrogen compound metabolic process	1.69E-02
154	GO:0009725: response to hormone	1.69E-02
155	GO:0006541: glutamine metabolic process	1.84E-02
156	GO:0010020: chloroplast fission	1.84E-02
157	GO:0010114: response to red light	1.84E-02
158	GO:0009644: response to high light intensity	1.99E-02
159	GO:0019853: L-ascorbic acid biosynthetic process	1.99E-02
160	GO:0046854: phosphatidylinositol phosphorylation	1.99E-02
161	GO:0006863: purine nucleobase transport	2.15E-02
162	GO:0080147: root hair cell development	2.32E-02
163	GO:0009863: salicylic acid mediated signaling pathway	2.32E-02
164	GO:0051302: regulation of cell division	2.49E-02
165	GO:0006418: tRNA aminoacylation for protein translation	2.49E-02
166	GO:0051260: protein homooligomerization	2.66E-02
167	GO:0080092: regulation of pollen tube growth	2.84E-02
168	GO:0006810: transport	3.05E-02
169	GO:0009306: protein secretion	3.20E-02
170	GO:0080167: response to karrikin	3.33E-02
171	GO:0016117: carotenoid biosynthetic process	3.39E-02
172	GO:0070417: cellular response to cold	3.39E-02
173	GO:0000413: protein peptidyl-prolyl isomerization	3.58E-02
174	GO:0010118: stomatal movement	3.58E-02
175	GO:0006396: RNA processing	3.64E-02
176	GO:0009958: positive gravitropism	3.78E-02
177	GO:0071472: cellular response to salt stress	3.78E-02
178	GO:0010197: polar nucleus fusion	3.78E-02
179	GO:0048868: pollen tube development	3.78E-02
180	GO:0015986: ATP synthesis coupled proton transport	3.98E-02
181	GO:0007059: chromosome segregation	3.98E-02
182	GO:0009646: response to absence of light	3.98E-02
183	GO:0008654: phospholipid biosynthetic process	4.18E-02
184	GO:0000302: response to reactive oxygen species	4.39E-02
185	GO:0006635: fatty acid beta-oxidation	4.39E-02
186	GO:0007264: small GTPase mediated signal transduction	4.60E-02
187	GO:0031047: gene silencing by RNA	4.60E-02
188	GO:0016032: viral process	4.60E-02
189	GO:0032502: developmental process	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
2	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
3	GO:0010276: phytol kinase activity	0.00E+00
4	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
5	GO:0042623: ATPase activity, coupled	0.00E+00
6	GO:0046905: phytoene synthase activity	0.00E+00
7	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
8	GO:0050126: N-carbamoylputrescine amidase activity	0.00E+00
9	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
10	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
11	GO:0015284: fructose uniporter activity	0.00E+00
12	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
13	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
14	GO:0016987: sigma factor activity	1.11E-06
15	GO:0001053: plastid sigma factor activity	1.11E-06
16	GO:0016491: oxidoreductase activity	2.80E-05
17	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	2.82E-05
18	GO:0016851: magnesium chelatase activity	6.13E-05
19	GO:0048038: quinone binding	7.67E-05
20	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.07E-04
21	GO:0019899: enzyme binding	4.10E-04
22	GO:0004733: pyridoxamine-phosphate oxidase activity	4.29E-04
23	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	4.29E-04
24	GO:0004856: xylulokinase activity	4.29E-04
25	GO:0004813: alanine-tRNA ligase activity	4.29E-04
26	GO:0004325: ferrochelatase activity	4.29E-04
27	GO:0008242: omega peptidase activity	4.29E-04
28	GO:0051996: squalene synthase activity	4.29E-04
29	GO:0052856: NADHX epimerase activity	4.29E-04
30	GO:0052857: NADPHX epimerase activity	4.29E-04
31	GO:0004830: tryptophan-tRNA ligase activity	4.29E-04
32	GO:0003879: ATP phosphoribosyltransferase activity	4.29E-04
33	GO:0030941: chloroplast targeting sequence binding	4.29E-04
34	GO:0004654: polyribonucleotide nucleotidyltransferase activity	4.29E-04
35	GO:0010347: L-galactose-1-phosphate phosphatase activity	4.29E-04
36	GO:0046906: tetrapyrrole binding	4.29E-04
37	GO:0008080: N-acetyltransferase activity	5.83E-04
38	GO:0010181: FMN binding	6.40E-04
39	GO:0052832: inositol monophosphate 3-phosphatase activity	9.27E-04
40	GO:0008934: inositol monophosphate 1-phosphatase activity	9.27E-04
41	GO:0004829: threonine-tRNA ligase activity	9.27E-04
42	GO:0052833: inositol monophosphate 4-phosphatase activity	9.27E-04
43	GO:0005353: fructose transmembrane transporter activity	9.27E-04
44	GO:0034722: gamma-glutamyl-peptidase activity	9.27E-04
45	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	9.27E-04
46	GO:0009977: proton motive force dependent protein transmembrane transporter activity	9.27E-04
47	GO:0004047: aminomethyltransferase activity	9.27E-04
48	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.18E-03
49	GO:0004519: endonuclease activity	1.41E-03
50	GO:0004180: carboxypeptidase activity	1.51E-03
51	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.51E-03
52	GO:0003913: DNA photolyase activity	1.51E-03
53	GO:0032947: protein complex scaffold	1.51E-03
54	GO:0004848: ureidoglycolate hydrolase activity	1.51E-03
55	GO:0004148: dihydrolipoyl dehydrogenase activity	1.51E-03
56	GO:0050307: sucrose-phosphate phosphatase activity	1.51E-03
57	GO:0004751: ribose-5-phosphate isomerase activity	1.51E-03
58	GO:0048027: mRNA 5'-UTR binding	2.18E-03
59	GO:0016149: translation release factor activity, codon specific	2.18E-03
60	GO:0009882: blue light photoreceptor activity	2.18E-03
61	GO:0047627: adenylylsulfatase activity	2.18E-03
62	GO:0043023: ribosomal large subunit binding	2.18E-03
63	GO:0003723: RNA binding	2.52E-03
64	GO:0004176: ATP-dependent peptidase activity	2.91E-03
65	GO:0008453: alanine-glyoxylate transaminase activity	2.93E-03
66	GO:0043015: gamma-tubulin binding	2.93E-03
67	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.93E-03
68	GO:0043495: protein anchor	2.93E-03
69	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.93E-03
70	GO:0051861: glycolipid binding	2.93E-03
71	GO:0022891: substrate-specific transmembrane transporter activity	3.48E-03
72	GO:0051537: 2 iron, 2 sulfur cluster binding	3.51E-03
73	GO:0051011: microtubule minus-end binding	3.76E-03
74	GO:0004623: phospholipase A2 activity	3.76E-03
75	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.76E-03
76	GO:0003727: single-stranded RNA binding	3.79E-03
77	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.64E-03
78	GO:0004605: phosphatidate cytidylyltransferase activity	4.65E-03
79	GO:0015631: tubulin binding	5.60E-03
80	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	5.60E-03
81	GO:0004559: alpha-mannosidase activity	5.60E-03
82	GO:0008237: metallopeptidase activity	7.62E-03
83	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	8.84E-03
84	GO:0016168: chlorophyll binding	9.07E-03
85	GO:0019843: rRNA binding	9.72E-03
86	GO:0071949: FAD binding	1.00E-02
87	GO:0003747: translation release factor activity	1.00E-02
88	GO:0008236: serine-type peptidase activity	1.07E-02
89	GO:0005381: iron ion transmembrane transporter activity	1.13E-02
90	GO:0045309: protein phosphorylated amino acid binding	1.13E-02
91	GO:0019904: protein domain specific binding	1.40E-02
92	GO:0000049: tRNA binding	1.54E-02
93	GO:0003924: GTPase activity	1.60E-02
94	GO:0000175: 3'-5'-exoribonuclease activity	1.69E-02
95	GO:0031072: heat shock protein binding	1.69E-02
96	GO:0000155: phosphorelay sensor kinase activity	1.69E-02
97	GO:0042802: identical protein binding	1.99E-02
98	GO:0051119: sugar transmembrane transporter activity	1.99E-02
99	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.15E-02
100	GO:0005528: FK506 binding	2.32E-02
101	GO:0051536: iron-sulfur cluster binding	2.32E-02
102	GO:0003954: NADH dehydrogenase activity	2.32E-02
103	GO:0043424: protein histidine kinase binding	2.49E-02
104	GO:0005345: purine nucleobase transmembrane transporter activity	2.49E-02
105	GO:0031625: ubiquitin protein ligase binding	2.75E-02
106	GO:0016887: ATPase activity	3.07E-02
107	GO:0008233: peptidase activity	3.26E-02
108	GO:0004812: aminoacyl-tRNA ligase activity	3.39E-02
109	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.78E-02
110	GO:0004872: receptor activity	4.18E-02
111	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.39E-02
112	GO:0004518: nuclease activity	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	3.43E-48
2	GO:0009535: chloroplast thylakoid membrane	6.98E-20
3	GO:0009570: chloroplast stroma	2.02E-08
4	GO:0009941: chloroplast envelope	1.63E-07
5	GO:0009543: chloroplast thylakoid lumen	6.04E-06
6	GO:0009534: chloroplast thylakoid	2.67E-05
7	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.73E-05
8	GO:0030286: dynein complex	1.07E-04
9	GO:0031969: chloroplast membrane	1.13E-04
10	GO:0055035: plastid thylakoid membrane	1.66E-04
11	GO:0009654: photosystem II oxygen evolving complex	2.67E-04
12	GO:0042651: thylakoid membrane	2.67E-04
13	GO:0031977: thylakoid lumen	4.65E-04
14	GO:0009579: thylakoid	4.92E-04
15	GO:0009523: photosystem II	6.99E-04
16	GO:0031304: intrinsic component of mitochondrial inner membrane	9.27E-04
17	GO:0080085: signal recognition particle, chloroplast targeting	9.27E-04
18	GO:0008274: gamma-tubulin ring complex	9.27E-04
19	GO:0008290: F-actin capping protein complex	9.27E-04
20	GO:0033281: TAT protein transport complex	1.51E-03
21	GO:0010007: magnesium chelatase complex	1.51E-03
22	GO:0009707: chloroplast outer membrane	1.69E-03
23	GO:0000923: equatorial microtubule organizing center	2.18E-03
24	GO:0042646: plastid nucleoid	2.18E-03
25	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	2.93E-03
26	GO:0009526: plastid envelope	2.93E-03
27	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	4.65E-03
28	GO:0019898: extrinsic component of membrane	5.52E-03
29	GO:0016363: nuclear matrix	5.60E-03
30	GO:0009533: chloroplast stromal thylakoid	6.62E-03
31	GO:0000123: histone acetyltransferase complex	6.62E-03
32	GO:0031359: integral component of chloroplast outer membrane	6.62E-03
33	GO:0009295: nucleoid	7.62E-03
34	GO:0005778: peroxisomal membrane	7.62E-03
35	GO:0009536: plastid	8.04E-03
36	GO:0009539: photosystem II reaction center	8.84E-03
37	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	8.84E-03
38	GO:0046930: pore complex	8.84E-03
39	GO:0010287: plastoglobule	9.07E-03
40	GO:0000922: spindle pole	1.00E-02
41	GO:0042644: chloroplast nucleoid	1.00E-02
42	GO:0016324: apical plasma membrane	1.26E-02
43	GO:0048471: perinuclear region of cytoplasm	1.40E-02
44	GO:0009508: plastid chromosome	1.69E-02
45	GO:0030095: chloroplast photosystem II	1.84E-02
46	GO:0005875: microtubule associated complex	2.15E-02
47	GO:0031966: mitochondrial membrane	2.31E-02
48	GO:0045271: respiratory chain complex I	2.49E-02
49	GO:0005747: mitochondrial respiratory chain complex I	3.04E-02
50	GO:0009706: chloroplast inner membrane	3.54E-02
51	GO:0005623: cell	4.53E-02