gene detail

Gene description

TAIR ID: AT5G54080

Short description: homogentisate 1,2-dioxygenase

Pathogen responsiveness: -0.49

General responsiveness: -0.57

Orthologous

Rice: No orthologous gene

Maize:

Wheat:

GO biological process

homogentisate catabolic process, oxidation-reduction process, L-phenylalanine catabolic process, tyrosine catabolic process

GO cellular component

cytoplasm, cytosol

GO molecular function

metal ion binding, homogentisate 1,2-dioxygenase activity

Protein domain

Pfam	PF04209, homogentisate 1,2-dioxygenase

Metabolic pathway

TYRFUMCAT-PWY: tyrosine degradation I

KEGG pathway

PATH:ath00350: Tyrosine metabolism

Transcriptional regulation

Regulator:
AT4G18770, AT4G36990

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

Differentially expressed condition

12 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	1.73	1.03E-04
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	1.76	1.24E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	2.23	5.10E-06
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	3.24	4.80E-13
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	3.17	4.24E-13
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	3.41	1.47E-13
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	3.85	7.13E-15
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	1.61	1.27E-03
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	1.66	1.79E-14
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	1.69	2.43E-14
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	1.64	4.34E-14
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	1.52	1.17E-03