gene detail

Gene description

TAIR ID: AT5G53110

Short description: RING/U-box superfamily protein

Pathogen responsiveness: 0.93

General responsiveness: 0.51

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G333022

Wheat: No orthologous gene

Gene Ontology

No GO annotation

Protein domain

Pfam	PF13639, Ring finger domain
Pfam	PF13947, Wall-associated receptor kinase galacturonan-binding
SMART	SM00184, RING

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT1G51600, AT3G27920

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

39 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE11807	Col, ERF104 ox, water 4 h	Col, ERF104 ox, Flg22 4 h	2.86	2.07E-02
GSE11807	Col, WT, water 4 h	Col, WT, Flg22 4 h	2.51	2.51E-02
GSE11807	Col, mpk6 ko, water 4 h	Col, mpk6 ko, Flg22 4 h	2.75	3.18E-02
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	1.71	8.23E-07
GSE13739	Col, WT, control 0 h	Col, WT, G.orontii 5 d	1.75	3.84E-11
GSE13739	Col, WT, control 7 d	Col, WT, G.orontii 7 d	3.06	5.26E-20
GSE17382	Col, WT, Flg22 0 min	Col, WT, Flg22 60min	1.75	4.56E-02
GSE17464	Laer, control	Laer, Alternaria brassicicola 3 d	-2.32	1.98E-07
GSE17464	Laer, control	Laer, Flg22 2 h	1.50	4.53E-04
GSE26679	Col, WT, GC 0 h	Col, WT, GC 96 h	1.82	2.27E-05
GSE37921	Col, WT, control	Col, WT, CMV	1.68	1.55E-03
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	1.57	8.07E-04
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	2.25	2.36E-05
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	1.88	1.72E-04
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	1.58	7.44E-10
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	2.09	1.74E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	2.34	3.30E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	1.99	2.49E-11
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	2.03	1.14E-10
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	1.76	1.09E-09
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	1.90	1.37E-10
GSE45214	Col, npr1, PstDC3000 AvrRpt2 0 h	Col, npr1, PstDC3000 AvrRpt2 4 h	2.01	2.00E-10
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_24 h	2.22	2.23E-07
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	3.23	2.45E-10
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_24 h	2.18	2.71E-07
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	3.17	2.48E-10
GSE5520	Col, WT, control 10 h	Col, WT, Cor- hrpS- 10 h	1.83	4.11E-03
GSE5520	Col, WT, control 7 h	Col, WT, E.coli_TUV86 flic- 7 h	1.63	2.05E-03
GSE5520	Col, WT, control 7 h	Col, WT, hrpA- 10 h	1.72	1.01E-03
GSE56094	Col, WT, control 3 h	Col, WT, hrpA- 3 h	1.73	2.89E-09
GSE56094	Col, WT, control 5 h	Col, WT, hrpA- 5 h	1.78	1.28E-09
GSE56094	Col, WT, control 6 h	Col, WT, hrpA- 6 h	1.62	2.21E-08
GSE5615	Col, WT, GST 4 h	Col, WT, GST+NPP1 4 h	1.91	1.69E-05
GSE5615	Col, WT, water 4 h	Col, WT, Flg22 4 h	3.70	3.42E-11
GSE5615	Col, WT, water 4 h	Col, WT, HrpZ 4 h	3.55	5.10E-11
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 HrpA- 12 h	1.81	3.29E-04
GSE6176	Col, WT, control 4 h	Col, WT, PstDC3000 HrpA- 4 h	1.52	1.11E-02
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	2.21	1.06E-05
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h	1.51	3.75E-03