Gene: AT5G52820
     

Gene description


TAIR ID: AT5G52820

Short description: WD-40 repeat family protein / notchless protein, putative

Pathogen responsiveness: -1.45

General responsiveness: -1.18

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G157034  

Wheat: No orthologous gene

GO biological process


ribosomal large subunit assembly, embryo sac development


GO cellular component


nucleolus, ribosome, Cul4-RING E3 ubiquitin ligase complex, nucleus


GO molecular function


unkown


Protein domain


PfamPF08154, NLE (NUC135) domain
PfamPF00400, WD domain, G-beta repeat
SMARTSM00320, WD40

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G49450, AT4G36990

Target:
none

Protein-protein interaction network


No Interactor


Differentially expressed condition


4 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE17464Penta, controlPenta, PstDC3000 12 h1.531.55E-06
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h1.931.01E-11
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h1.891.44E-11
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h2.336.37E-13






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