gene detail

Gene description

TAIR ID: AT5G52820

Short description: WD-40 repeat family protein / notchless protein, putative

Pathogen responsiveness: -1.45

General responsiveness: -1.18

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G157034

Wheat: No orthologous gene

GO biological process

ribosomal large subunit assembly, embryo sac development

GO cellular component

nucleolus, ribosome, Cul4-RING E3 ubiquitin ligase complex, nucleus

GO molecular function

unkown

Protein domain

Pfam	PF08154, NLE (NUC135) domain
Pfam	PF00400, WD domain, G-beta repeat
SMART	SM00320, WD40

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G49450, AT4G36990

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

4 conditions

Show entries

Search:

Series	Control	Treatment	Log₂FC	Adj. P value
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	2.33	6.37E-13
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	1.93	1.01E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	1.89	1.44E-11
GSE17464	Penta, control	Penta, PstDC3000 12 h	1.53	1.55E-06

Showing 1 to 4 of 4 entries

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