Gene: AT5G48670
     


Gene description


TAIR ID: AT5G48670

Short description: AGAMOUS-like 80

Pathogen responsiveness: -2.99

General responsiveness: -4.53

Orthologous


Rice: No orthologous gene
Maize:

GRMZM5G853066   GRMZM5G839969  

Wheat: No orthologous gene

GO biological process


positive regulation of transcription from RNA polymerase II promoter, transcription, DNA-templated


GO cellular component


nucleus, polar nucleus


GO molecular function


transcription factor activity, sequence-specific DNA binding, protein binding, RNA polymerase II core promoter proximal region sequence-specific binding, core promoter proximal region sequence-specific DNA binding, protein dimerization activity


Protein domain


PfamPF00319, SRF-type transcription factor (DNA-binding and dimerisation domain)
SMARTSM00432, MADS

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT3G24050

Target:
AT5G04560, AT1G22015

Protein-protein interaction network


The number of partners (degree) is: 9 (Top20%)

click to view PPI network

Differentially expressed condition


2 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h1.701.03E-03
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h1.902.60E-04






Copyright © 2017 Ziding Zhang's Lab - China Agricultural University. All Rights Reserved.