Gene: AT5G45100
     

Gene description


TAIR ID: AT5G45100

Short description: SBP (S-ribonuclease binding protein) family protein

Pathogen responsiveness: NA

General responsiveness: NA

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G035821   GRMZM2G055037  

Wheat: No orthologous gene

GO biological process


proteasome-mediated ubiquitin-dependent protein catabolic process, defense response, regulation of programmed cell death


GO cellular component


cytoplasm


GO molecular function


ubiquitin-protein transferase activity, metal ion binding


Protein domain


PfamPF13920, Zinc finger, C3HC4 type (RING finger)

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G13790, AT1G24260, AT5G61850, AT4G36990, AT4G31800

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 1

click to view PPI network

Differentially expressed condition


6 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE37269St0, WT, controlSt0, WT, TEV 21 d-1.804.15E-03
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h1.812.57E-10
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h1.978.32E-11
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h2.191.34E-11
GSE45214Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h1.761.39E-10
GSE45214Col, npr1, PstDC3000 AvrRpt2 0 hCol, npr1, PstDC3000 AvrRpt2 4 h1.693.80E-10






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