gene detail

Gene description

TAIR ID: AT5G43760

Short description: 3-ketoacyl-CoA synthase 20

Pathogen responsiveness: -1.66

General responsiveness: -1.53

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

fatty acid biosynthetic process, response to cold, response to light stimulus

GO cellular component

integral component of membrane, nucleus

GO molecular function

fatty acid elongase activity, 3-oxo-arachidoyl-CoA synthase activity, very-long-chain 3-ketoacyl-CoA synthase activity, 3-oxo-cerotoyl-CoA synthase activity, 3-oxo-lignoceronyl-CoA synthase activity

Protein domain

Pfam	PF08541, 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Pfam	PF08392, FAE1/Type III polyketide synthase-like protein

Metabolic pathway

PWY-5136: fatty acid β-oxidation II (peroxisome)
PWY-5995: linoleate biosynthesis I (plants)
PWY-5143: fatty acid activation
PWY-5080: very long chain fatty acid biosynthesis I
PWY-6803: phosphatidylcholine acyl editing

KEGG pathway

PATH:ath00062: Fatty acid elongation

Transcriptional regulation

Regulator:
AT1G24260

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 3

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

5 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, Flg22 2 h	1.52	3.47E-05
GSE17464	Penta, control	Penta, Flg22 2 h	1.60	1.51E-05
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.82	5.59E-03
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.66	6.95E-03
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	1.58	3.55E-08