Gene: AT5G42940
     


Gene description


TAIR ID: AT5G42940

Short description: RING/U-box superfamily protein

Pathogen responsiveness: -1.03

General responsiveness: -1.55

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


protein ubiquitination


GO cellular component


unkown


GO molecular function


metal ion binding


Protein domain


PfamPF13639, Ring finger domain
SMARTSM00184, RING

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G13790, AT4G36990

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 5

click to view PPI network

Differentially expressed condition


5 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h1.531.14E-09
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h1.765.91E-05
GSE56094Col, WT, control 10 hCol, WT, PstDC3000 10 h1.888.37E-14
GSE56094Col, WT, control 13 hCol, WT, PstDC3000 13 h1.842.97E-13
GSE56094Col, WT, control 8 hCol, WT, PstDC3000 8 h1.611.65E-10






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