Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G42940

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0060154: cellular process regulating host cell cycle in response to virus0.00E+00
2GO:0080034: host response to induction by symbiont of tumor, nodule or growth in host0.00E+00
3GO:2000035: regulation of stem cell division0.00E+00
4GO:0030581: symbiont intracellular protein transport in host0.00E+00
5GO:0009699: phenylpropanoid biosynthetic process9.62E-06
6GO:2000069: regulation of post-embryonic root development2.76E-05
7GO:0099132: ATP hydrolysis coupled cation transmembrane transport2.76E-05
8GO:0046244: salicylic acid catabolic process2.76E-05
9GO:0006409: tRNA export from nucleus2.76E-05
10GO:0010372: positive regulation of gibberellin biosynthetic process7.01E-05
11GO:0060919: auxin influx7.01E-05
12GO:0010155: regulation of proton transport7.01E-05
13GO:0009686: gibberellin biosynthetic process8.11E-05
14GO:0090630: activation of GTPase activity1.23E-04
15GO:0009800: cinnamic acid biosynthetic process1.83E-04
16GO:0010483: pollen tube reception2.48E-04
17GO:0046777: protein autophosphorylation3.13E-04
18GO:0030308: negative regulation of cell growth3.18E-04
19GO:0030041: actin filament polymerization3.18E-04
20GO:0048317: seed morphogenesis3.92E-04
21GO:0010315: auxin efflux3.92E-04
22GO:0006559: L-phenylalanine catabolic process3.92E-04
23GO:0033365: protein localization to organelle3.92E-04
24GO:0009819: drought recovery6.32E-04
25GO:0006402: mRNA catabolic process6.32E-04
26GO:0019375: galactolipid biosynthetic process6.32E-04
27GO:0045010: actin nucleation6.32E-04
28GO:0060321: acceptance of pollen7.18E-04
29GO:0007338: single fertilization8.07E-04
30GO:0006607: NLS-bearing protein import into nucleus8.07E-04
31GO:0006265: DNA topological change1.09E-03
32GO:0009750: response to fructose1.09E-03
33GO:0010105: negative regulation of ethylene-activated signaling pathway1.19E-03
34GO:0000266: mitochondrial fission1.19E-03
35GO:0046274: lignin catabolic process1.29E-03
36GO:0034605: cellular response to heat1.40E-03
37GO:0010540: basipetal auxin transport1.40E-03
38GO:0070588: calcium ion transmembrane transport1.50E-03
39GO:0046854: phosphatidylinositol phosphorylation1.50E-03
40GO:0006338: chromatin remodeling1.73E-03
41GO:0010227: floral organ abscission2.22E-03
42GO:0009306: protein secretion2.35E-03
43GO:0009723: response to ethylene2.56E-03
44GO:0009960: endosperm development2.74E-03
45GO:0010182: sugar mediated signaling pathway2.74E-03
46GO:0009741: response to brassinosteroid2.74E-03
47GO:0007059: chromosome segregation2.88E-03
48GO:0009791: post-embryonic development3.02E-03
49GO:0008654: phospholipid biosynthetic process3.02E-03
50GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.16E-03
51GO:0031047: gene silencing by RNA3.31E-03
52GO:0009630: gravitropism3.31E-03
53GO:0030163: protein catabolic process3.45E-03
54GO:0071281: cellular response to iron ion3.45E-03
55GO:0016579: protein deubiquitination3.90E-03
56GO:0001666: response to hypoxia4.06E-03
57GO:0009615: response to virus4.06E-03
58GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.22E-03
59GO:0048767: root hair elongation5.04E-03
60GO:0009873: ethylene-activated signaling pathway5.19E-03
61GO:0009926: auxin polar transport6.82E-03
62GO:0009744: response to sucrose6.82E-03
63GO:0016310: phosphorylation7.23E-03
64GO:0006260: DNA replication7.79E-03
65GO:0009846: pollen germination7.99E-03
66GO:0051603: proteolysis involved in cellular protein catabolic process8.60E-03
67GO:0010224: response to UV-B8.60E-03
68GO:0006511: ubiquitin-dependent protein catabolic process9.68E-03
69GO:0016569: covalent chromatin modification1.03E-02
70GO:0051726: regulation of cell cycle1.12E-02
71GO:0009742: brassinosteroid mediated signaling pathway1.12E-02
72GO:0009845: seed germination1.33E-02
73GO:0016036: cellular response to phosphate starvation1.51E-02
74GO:0009860: pollen tube growth2.27E-02
75GO:0080167: response to karrikin2.51E-02
76GO:0006886: intracellular protein transport2.92E-02
77GO:0006629: lipid metabolic process3.32E-02
78GO:0048364: root development3.42E-02
79GO:0006397: mRNA processing3.42E-02
80GO:0008152: metabolic process3.56E-02
81GO:0009734: auxin-activated signaling pathway4.24E-02
82GO:0016567: protein ubiquitination4.39E-02
83GO:0009735: response to cytokinin4.68E-02
84GO:0009651: response to salt stress4.84E-02
85GO:0009738: abscisic acid-activated signaling pathway4.87E-02
86GO:0009555: pollen development4.99E-02
RankGO TermAdjusted P value
1GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity2.76E-05
2GO:0034450: ubiquitin-ubiquitin ligase activity2.76E-05
3GO:0045548: phenylalanine ammonia-lyase activity1.23E-04
4GO:0010328: auxin influx transmembrane transporter activity2.48E-04
5GO:0003917: DNA topoisomerase type I activity2.48E-04
6GO:0008195: phosphatidate phosphatase activity4.69E-04
7GO:0016301: kinase activity5.42E-04
8GO:0004430: 1-phosphatidylinositol 4-kinase activity7.18E-04
9GO:0016207: 4-coumarate-CoA ligase activity8.07E-04
10GO:0016874: ligase activity8.15E-04
11GO:0008559: xenobiotic-transporting ATPase activity1.09E-03
12GO:0000049: tRNA binding1.19E-03
13GO:0005388: calcium-transporting ATPase activity1.29E-03
14GO:0010329: auxin efflux transmembrane transporter activity1.29E-03
15GO:0008139: nuclear localization sequence binding1.29E-03
16GO:0036459: thiol-dependent ubiquitinyl hydrolase activity1.97E-03
17GO:0004843: thiol-dependent ubiquitin-specific protease activity3.16E-03
18GO:0004518: nuclease activity3.31E-03
19GO:0003729: mRNA binding3.84E-03
20GO:0008270: zinc ion binding4.58E-03
21GO:0005096: GTPase activator activity5.04E-03
22GO:0050897: cobalt ion binding5.38E-03
23GO:0004712: protein serine/threonine/tyrosine kinase activity6.09E-03
24GO:0003779: actin binding1.05E-02
25GO:0005515: protein binding1.27E-02
26GO:0008565: protein transporter activity1.43E-02
27GO:0005524: ATP binding1.75E-02
28GO:0004674: protein serine/threonine kinase activity1.75E-02
29GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.88E-02
30GO:0004842: ubiquitin-protein transferase activity2.00E-02
31GO:0004672: protein kinase activity2.13E-02
32GO:0004871: signal transducer activity2.95E-02
RankGO TermAdjusted P value
1GO:0043680: filiform apparatus0.00E+00
2GO:0016442: RISC complex2.76E-05
3GO:0031298: replication fork protection complex2.48E-04
4GO:0005643: nuclear pore2.84E-04
5GO:0010494: cytoplasmic stress granule8.07E-04
6GO:0048471: perinuclear region of cytoplasm1.09E-03
7GO:0005886: plasma membrane1.45E-03
8GO:0005741: mitochondrial outer membrane1.97E-03
9GO:0000145: exocyst3.31E-03
10GO:0000932: P-body4.06E-03
11GO:0000151: ubiquitin ligase complex4.87E-03
12GO:0009506: plasmodesma4.87E-03
13GO:0016020: membrane6.73E-03
14GO:0005737: cytoplasm8.09E-03
15GO:0000502: proteasome complex8.40E-03
16GO:0005635: nuclear envelope8.81E-03
17GO:0005654: nucleoplasm1.24E-02
18GO:0005623: cell1.28E-02
19GO:0009524: phragmoplast1.31E-02
20GO:0005789: endoplasmic reticulum membrane2.21E-02
21GO:0005829: cytosol2.34E-02
22GO:0043231: intracellular membrane-bounded organelle3.56E-02
23GO:0005887: integral component of plasma membrane4.13E-02
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Gene type



Gene DE type