gene detail

Gene description

TAIR ID: AT5G42540

Short description: exoribonuclease 2

Pathogen responsiveness: -1.81

General responsiveness: -1.99

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

rRNA 5'-end processing, mRNA processing, miRNA catabolic process, nuclear polyadenylation-dependent rRNA catabolic process, negative regulation of posttranscriptional gene silencing

GO cellular component

nucleus

GO molecular function

zinc ion binding, 5'-3' exoribonuclease activity, 5'-3' exonuclease activity, nucleic acid binding

Protein domain

Pfam	PF00098, Zinc knuckle
Pfam	PF03159, XRN 5'-3' exonuclease N-terminus
SMART	SM00343, ZnF_C2HC

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath03008: Ribosome biogenesis in eukaryotes
PATH:ath03018: RNA degradation

Transcriptional regulation

Regulator:
AT4G16110, AT4G18770

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

3 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Penta, control	Penta, Flg22 2 h	-1.75	3.43E-05
GSE18329	Col, wrky72_1, control	Col, wrky72_1, Hpa noco2 96 h	1.73	1.12E-08
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.73	3.26E-02