Gene: AT5G39680
     

Gene description


TAIR ID: AT5G39680

Short description: Pentatricopeptide repeat (PPR) superfamily protein

Pathogen responsiveness: -1.02

General responsiveness: -3.95

Orthologous


Rice:

OS05G0572900  

Maize:

GRMZM2G163359  

Wheat: No orthologous gene

GO biological process


embryo development ending in seed dormancy, RNA modification


GO cellular component


mitochondrion, intracellular membrane-bounded organelle


GO molecular function


zinc ion binding, endonuclease activity, RNA binding


Protein domain


PfamPF14432, DYW family of nucleic acid deaminases
PfamPF01535, PPR repeat
PfamPF13041, PPR repeat family

KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT2G38250, AT4G18770

Target:
none

Protein-protein interaction network


No Interactor


Differentially expressed condition


9 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h1.673.58E-03
GSE26679Col, WT, GC 0 hCol, WT, GC 36 h1.712.79E-03
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h1.821.60E-03
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h2.435.03E-05
GSE45214Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h2.122.94E-11
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h2.131.14E-11
GSE45214Col, npr1, PstDC3000 AvrRpt2 0 hCol, npr1, PstDC3000 AvrRpt2 4 h2.095.29E-11
GSE52979Col, WT, acetoneCol, WT, acetone flg22_2 h1.961.14E-04
GSE52979Col, WT, oxo_C14_HSLCol, WT, oxo_C14_HSL flg22_2 h1.664.90E-04






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