Gene: AT5G38890
     

Gene description


TAIR ID: AT5G38890

Short description: Nucleic acid-binding, OB-fold-like protein

Pathogen responsiveness: -1.86

General responsiveness: -1.84

Orthologous


Rice:

OS02G0815800  

Maize:

GRMZM5G841900  

Wheat: No orthologous gene

GO biological process


biological_process


GO cellular component


nucleus


GO molecular function


RNA binding


Protein domain


PfamPF14382, Exosome complex exonuclease RRP4 N-terminal region
PfamPF10447, Exosome component EXOSC1/CSL4

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT3G14230, AT5G61850

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 3

click to view PPI network

Differentially expressed condition


5 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h1.642.34E-09
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h1.971.87E-10
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h2.281.62E-11
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h2.047.41E-03
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 6 h1.762.33E-02






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