Gene: AT5G38530
Gene description
TAIR ID: AT5G38530
Short description: tryptophan synthase beta type 2
Pathogen responsiveness: -1.07
General responsiveness: -1.10
GO biological process
tryptophan biosynthetic process
GO cellular component
chloroplast
GO molecular function
pyridoxal phosphate binding, L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity, protein homodimerization activity, tryptophan synthase activity
Metabolic pathway
COMPLETE-ARO-ARA-PWY: superpathway of phenylalanine, tyrosine and tryptophan biosynthesis
TRPSYN-PWY: tryptophan biosynthesis
KEGG pathway
PATH:ath01230: Biosynthesis of amino acids
PATH:ath00260: Glycine, serine and threonine metabolism
PATH:ath00400: Phenylalanine, tyrosine and tryptophan biosynthesis
click to view PPI networkCoexpression network
Differentially expressed condition 
9 conditions
| Series | Control | Treatment | Log2FC | Adj. P value |
|---|---|---|---|---|
| GSE12856 | Col, WT, control | Col, WT, Bg h | 1.72 | 1.85E-08 |
| GSE18329 | Col, wrky72_1, control | Col, wrky72_1, Hpa noco2 96 h | 1.54 | 1.59E-08 |
| GSE18329 | Col, wrky72_1, control | Col, wrky72_2, Hpa noco2 96 h | 1.54 | 1.79E-08 |
| GSE18978 | Col, WT, control 24 h | Col, WT, PsmES4326 24 h | 1.62 | 2.78E-08 |
| GSE45212 | Col, WT, PstDC3000 AvrRpt2 0 h | Col, WT, PstDC3000 AvrRpt2 12 h | 2.03 | 4.65E-15 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 12 h | 1.71 | 4.10E-14 |
| GSE45212 | Col, med14, PstDC3000 AvrRpt2 0 h | Col, med14, PstDC3000 AvrRpt2 8 h | 2.12 | 2.30E-15 |
| GSE5520 | Col, WT, control 24 h | Col, WT, PstDC3000 24 h | 1.77 | 2.32E-02 |
| GSE9674 | Ws-4, WT, control | Ws-4, WT, Xanthomonas strain Xcc147 6 h | 1.58 | 1.19E-02 |
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