gene detail

Gene description

TAIR ID: AT5G35360

Short description: acetyl Co-enzyme a carboxylase biotin carboxylase subunit

Pathogen responsiveness: -1.04

General responsiveness: -1.92

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

fatty acid biosynthetic process, malonyl-CoA biosynthetic process

GO cellular component

chloroplast, chloroplast stroma, chloroplast envelope

GO molecular function

biotin carboxylase activity, acetyl-CoA carboxylase activity, ATP binding, metal ion binding

Protein domain

Pfam	PF00289, Biotin carboxylase, N-terminal domain
Pfam	PF02786, Carbamoyl-phosphate synthase L chain, ATP binding domain
Pfam	PF02785, Biotin carboxylase C-terminal domain
SMART	SM00878, Biotin_carb_C

Metabolic pathway

PWY0-1264: biotin-carboxyl carrier protein assembly
PWY-4381: fatty acid biosynthesis initiation I
PWY-5156: superpathway of fatty acid biosynthesis II (plant)

KEGG pathway

PATH:ath01200: Carbon metabolism
PATH:ath01212: Fatty acid metabolism
PATH:ath00620: Pyruvate metabolism
PATH:ath00640: Propanoate metabolism
PATH:ath00061: Fatty acid biosynthesis

Transcriptional regulation

Regulator:
AT2G47190

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 5

click to view PPI network

Coexpression network

GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_EDS16_GO  view
GSE26679_EDR1_GC  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

4 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.54	6.42E-09
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-1.63	3.97E-10
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.84	3.64E-06
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	-2.09	4.72E-04