co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G35360

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
2	GO:0006223: uracil salvage	0.00E+00
3	GO:0016553: base conversion or substitution editing	0.00E+00
4	GO:0009735: response to cytokinin	3.55E-07
5	GO:0071588: hydrogen peroxide mediated signaling pathway	1.21E-05
6	GO:0043489: RNA stabilization	1.21E-05
7	GO:0006412: translation	1.22E-05
8	GO:0010270: photosystem II oxygen evolving complex assembly	3.21E-05
9	GO:0006241: CTP biosynthetic process	8.79E-05
10	GO:0006165: nucleoside diphosphate phosphorylation	8.79E-05
11	GO:0006228: UTP biosynthetic process	8.79E-05
12	GO:0006424: glutamyl-tRNA aminoacylation	8.79E-05
13	GO:0009631: cold acclimation	1.13E-04
14	GO:0006183: GTP biosynthetic process	1.22E-04
15	GO:0045727: positive regulation of translation	1.22E-04
16	GO:0044206: UMP salvage	1.22E-04
17	GO:0006461: protein complex assembly	1.59E-04
18	GO:0043097: pyrimidine nucleoside salvage	1.59E-04
19	GO:0032543: mitochondrial translation	1.59E-04
20	GO:0006828: manganese ion transport	1.98E-04
21	GO:0006206: pyrimidine nucleobase metabolic process	1.98E-04
22	GO:0010019: chloroplast-nucleus signaling pathway	2.39E-04
23	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.39E-04
24	GO:0009657: plastid organization	3.73E-04
25	GO:0032544: plastid translation	3.73E-04
26	GO:0010206: photosystem II repair	4.21E-04
27	GO:0006816: calcium ion transport	5.71E-04
28	GO:0042254: ribosome biogenesis	8.52E-04
29	GO:0009116: nucleoside metabolic process	9.02E-04
30	GO:0009411: response to UV	1.14E-03
31	GO:0045454: cell redox homeostasis	1.21E-03
32	GO:0000413: protein peptidyl-prolyl isomerization	1.34E-03
33	GO:0000302: response to reactive oxygen species	1.61E-03
34	GO:0032502: developmental process	1.68E-03
35	GO:0030163: protein catabolic process	1.76E-03
36	GO:0045087: innate immune response	2.89E-03
37	GO:0034599: cellular response to oxidative stress	2.97E-03
38	GO:0042542: response to hydrogen peroxide	3.33E-03
39	GO:0006364: rRNA processing	4.20E-03
40	GO:0009585: red, far-red light phototransduction	4.20E-03
41	GO:0006396: RNA processing	5.45E-03
42	GO:0042744: hydrogen peroxide catabolic process	6.82E-03
43	GO:0009409: response to cold	7.05E-03
44	GO:0016036: cellular response to phosphate starvation	7.42E-03
45	GO:0009451: RNA modification	7.92E-03
46	GO:0009658: chloroplast organization	1.06E-02
47	GO:0015979: photosynthesis	1.35E-02
48	GO:0006508: proteolysis	1.61E-02
49	GO:0006397: mRNA processing	1.67E-02
50	GO:0009753: response to jasmonic acid	1.71E-02
51	GO:0008152: metabolic process	1.74E-02
52	GO:0009734: auxin-activated signaling pathway	2.07E-02
53	GO:0045893: positive regulation of transcription, DNA-templated	2.69E-02
54	GO:0006457: protein folding	2.94E-02
55	GO:0042742: defense response to bacterium	4.04E-02
56	GO:0055114: oxidation-reduction process	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0019843: rRNA binding	2.21E-07
2	GO:0003735: structural constituent of ribosome	7.35E-07
3	GO:0051920: peroxiredoxin activity	1.03E-06
4	GO:0016209: antioxidant activity	1.96E-06
5	GO:0008266: poly(U) RNA binding	1.03E-05
6	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	1.21E-05
7	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.21E-05
8	GO:0004148: dihydrolipoyl dehydrogenase activity	5.78E-05
9	GO:0004550: nucleoside diphosphate kinase activity	8.79E-05
10	GO:0004845: uracil phosphoribosyltransferase activity	1.22E-04
11	GO:0004130: cytochrome-c peroxidase activity	1.98E-04
12	GO:0016688: L-ascorbate peroxidase activity	1.98E-04
13	GO:0004849: uridine kinase activity	2.39E-04
14	GO:0005384: manganese ion transmembrane transporter activity	4.69E-04
15	GO:0015095: magnesium ion transmembrane transporter activity	6.76E-04
16	GO:0004601: peroxidase activity	8.37E-04
17	GO:0003729: mRNA binding	1.05E-03
18	GO:0050662: coenzyme binding	1.47E-03
19	GO:0008237: metallopeptidase activity	1.91E-03
20	GO:0008236: serine-type peptidase activity	2.38E-03
21	GO:0004222: metalloendopeptidase activity	2.63E-03
22	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.80E-03
23	GO:0004252: serine-type endopeptidase activity	6.70E-03
24	GO:0016740: transferase activity	2.81E-02
25	GO:0005525: GTP binding	3.48E-02
26	GO:0003824: catalytic activity	4.32E-02
27	GO:0016491: oxidoreductase activity	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009570: chloroplast stroma	1.06E-22
3	GO:0009941: chloroplast envelope	6.75E-22
4	GO:0009507: chloroplast	2.03E-19
5	GO:0009579: thylakoid	6.50E-14
6	GO:0009535: chloroplast thylakoid membrane	2.85E-11
7	GO:0009534: chloroplast thylakoid	3.32E-10
8	GO:0009533: chloroplast stromal thylakoid	2.39E-09
9	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.21E-05
10	GO:0010287: plastoglobule	1.31E-05
11	GO:0009543: chloroplast thylakoid lumen	1.43E-05
12	GO:0031977: thylakoid lumen	1.51E-04
13	GO:0000311: plastid large ribosomal subunit	6.23E-04
14	GO:0005840: ribosome	6.84E-04
15	GO:0030095: chloroplast photosystem II	7.31E-04
16	GO:0000312: plastid small ribosomal subunit	7.31E-04
17	GO:0031969: chloroplast membrane	1.02E-03
18	GO:0009523: photosystem II	1.54E-03
19	GO:0010319: stromule	1.91E-03
20	GO:0030529: intracellular ribonucleoprotein complex	2.06E-03
21	GO:0022627: cytosolic small ribosomal subunit	9.48E-03
22	GO:0022625: cytosolic large ribosomal subunit	1.28E-02
23	GO:0048046: apoplast	1.90E-02
24	GO:0022626: cytosolic ribosome	2.37E-02
25	GO:0009536: plastid	4.67E-02
26	GO:0009505: plant-type cell wall	4.74E-02