gene detail

Gene description

TAIR ID: AT5G26742

Short description: DEAD box RNA helicase (RH3)

Pathogen responsiveness: NA

General responsiveness: NA

Orthologous

Rice:

OS03G0827700

Maize:

AC198418.3_FGT005

Wheat:

TA.491.1.S1_AT

GO biological process

Group II intron splicing, embryo development ending in seed dormancy, RNA secondary structure unwinding, response to salt stress, chloroplast organization, ribosome biogenesis

GO cellular component

chloroplast stroma, chloroplast, nucleolus, chloroplast envelope, membrane, nucleus

GO molecular function

ATP binding, zinc ion binding, ATP-dependent helicase activity, RNA binding, helicase activity, ATP-dependent RNA helicase activity

Protein domain

Pfam	PF00098, Zinc knuckle
Pfam	PF08152, GUCT (NUC152) domain
Pfam	PF00270, DEAD/DEAH box helicase
Pfam	PF00271, Helicase conserved C-terminal domain
SMART	SM00490, HELICc
SMART	SM00343, ZnF_C2HC
SMART	SM00487, DEXDc

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT2G38250

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 5

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2 view
GSE45212_MED14_PSTDC3000_AVRRPT2 view

Differentially expressed condition

6 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.87	2.22E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-2.35	2.03E-11
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	-1.83	2.30E-09
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-2.19	7.59E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.51	1.27E-08
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-2.47	1.90E-12