gene detail

Gene description

TAIR ID: AT5G25890

Short description: indole-3-acetic acid inducible 28

Pathogen responsiveness: -1.19

General responsiveness: 1.18

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

transcription, DNA-templated, regulation of transcription, auxin-activated signaling pathway, lateral root morphogenesis, regulation of translation, response to auxin

GO cellular component

nucleus, intracellular

GO molecular function

protein binding, transcription factor activity, sequence-specific DNA binding

Protein domain

Pfam	PF02309, AUX/IAA family

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath04075: Plant hormone signal transduction

Transcriptional regulation

Regulator:
AT5G56110, AT5G12870, AT5G62000, AT3G08500

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 45 (Top5%)

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

9 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	1.78	4.37E-07
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	2.00	5.69E-08
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	2.12	1.31E-08
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.70	8.10E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	2.03	2.83E-12
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	1.57	1.48E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	1.99	4.06E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	2.00	3.30E-12
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	1.75	6.79E-06