Gene: AT5G24120
     


Gene description


TAIR ID: AT5G24120

Short description: sigma factor E

Pathogen responsiveness: 0.39

General responsiveness: 1.51

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G077436  

Wheat: No orthologous gene

GO biological process


cellular response to blue light, positive regulation of transcription, DNA-templated, DNA-templated transcription, initiation, response to red light, response to blue light, response to far red light, photosystem II assembly, regulation of transcription, chloroplast organization, embryo sac development, regulation of RNA biosynthetic process, cellular response to salt stress


GO cellular component


mitochondrion, chloroplast


GO molecular function


plastid sigma factor activity, DNA-directed 5'-3' RNA polymerase activity, DNA binding, transcription factor activity, sequence-specific DNA binding, protein binding, sigma factor activity


Protein domain


PfamPF04539, Sigma-70 region 3
PfamPF04542, Sigma-70 region 2
PfamPF04545, Sigma-70, region 4

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT5G61850

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 1

click to view PPI network

Differentially expressed condition


18 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE17464Laer, controlLaer, Alternaria brassicicola 3 d-2.299.14E-03
GSE17464Laer, controlLaer, PstDC3000 12 h-2.771.52E-03
GSE17464Penta, controlPenta, Alternaria brassicicola 3 d-2.994.74E-04
GSE17464Penta, controlPenta, PstDC3000 12 h-3.612.46E-05
GSE17464Penta, controlPenta, Flg22 2 h-1.942.07E-02
GSE26679Col, WT, GC 0 hCol, WT, GC 18 h-3.171.25E-13
GSE26679Col, WT, GC 0 hCol, WT, GC 36 h-4.947.69E-18
GSE26679Col, edr1, GC 0 hCol, edr1, GC 18 h-3.091.66E-13
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h-4.871.01E-17
GSE37269St0, WT, controlSt0, WT, TEV 21 d-1.941.51E-03
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-2.301.00E-10
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h-2.202.21E-10
GSE52979Col, WT, acetoneCol, WT, acetone flg22_2 h-2.301.83E-03
GSE52979Col, WT, oxo_C14_HSLCol, WT, oxo_C14_HSL flg22_2 h-2.625.37E-04
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h-2.031.59E-03
GSE5520Col, WT, control 10 hCol, WT, Cor- hrpS- 10 h-2.111.11E-02
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h-2.579.78E-04
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 90-105 min2.533.47E-02






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