gene detail

Gene description

TAIR ID: AT5G23520

Short description: smr (Small MutS Related) domain-containing protein

Pathogen responsiveness: -1.15

General responsiveness: -2.08

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G158069

Wheat: No orthologous gene

GO biological process

unkown

GO cellular component

cytoplasm

GO molecular function

unkown

Protein domain

Pfam	PF01713, Smr domain
Pfam	PF08590, Domain of unknown function (DUF1771)
SMART	SM01162, DUF1771
SMART	SM00463, SMR

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT2G38250, AT4G36990

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

5 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, Flg22 2 h	1.54	8.31E-06
GSE17464	Penta, control	Penta, Flg22 2 h	1.56	3.51E-06
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.62	2.72E-02
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	1.72	7.71E-12
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	1.53	1.58E-09