co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G23520

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006903: vesicle targeting	0.00E+00
2	GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase	0.00E+00
3	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
4	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
5	GO:0000188: inactivation of MAPK activity	0.00E+00
6	GO:0006182: cGMP biosynthetic process	0.00E+00
7	GO:0006468: protein phosphorylation	8.49E-06
8	GO:0000162: tryptophan biosynthetic process	9.59E-06
9	GO:0010044: response to aluminum ion	4.92E-05
10	GO:0048482: plant ovule morphogenesis	1.08E-04
11	GO:0043547: positive regulation of GTPase activity	1.08E-04
12	GO:0043985: histone H4-R3 methylation	1.08E-04
13	GO:0006643: membrane lipid metabolic process	1.08E-04
14	GO:0009968: negative regulation of signal transduction	1.08E-04
15	GO:0080185: effector dependent induction by symbiont of host immune response	2.52E-04
16	GO:0050684: regulation of mRNA processing	2.52E-04
17	GO:0051645: Golgi localization	2.52E-04
18	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	2.52E-04
19	GO:0060151: peroxisome localization	2.52E-04
20	GO:0051646: mitochondrion localization	4.19E-04
21	GO:0032784: regulation of DNA-templated transcription, elongation	4.19E-04
22	GO:0090436: leaf pavement cell development	4.19E-04
23	GO:0046621: negative regulation of organ growth	4.19E-04
24	GO:0006612: protein targeting to membrane	6.01E-04
25	GO:0006893: Golgi to plasma membrane transport	6.01E-04
26	GO:0006882: cellular zinc ion homeostasis	6.01E-04
27	GO:0048830: adventitious root development	7.98E-04
28	GO:0010225: response to UV-C	1.01E-03
29	GO:0006904: vesicle docking involved in exocytosis	1.09E-03
30	GO:0048317: seed morphogenesis	1.23E-03
31	GO:0006014: D-ribose metabolic process	1.23E-03
32	GO:0009759: indole glucosinolate biosynthetic process	1.23E-03
33	GO:0042742: defense response to bacterium	1.28E-03
34	GO:0009816: defense response to bacterium, incompatible interaction	1.29E-03
35	GO:0000911: cytokinesis by cell plate formation	1.47E-03
36	GO:0009423: chorismate biosynthetic process	1.47E-03
37	GO:0009612: response to mechanical stimulus	1.47E-03
38	GO:0009617: response to bacterium	1.49E-03
39	GO:0046470: phosphatidylcholine metabolic process	1.73E-03
40	GO:0030162: regulation of proteolysis	2.00E-03
41	GO:0006875: cellular metal ion homeostasis	2.00E-03
42	GO:0032875: regulation of DNA endoreduplication	2.00E-03
43	GO:0006102: isocitrate metabolic process	2.00E-03
44	GO:0006099: tricarboxylic acid cycle	2.08E-03
45	GO:0006303: double-strand break repair via nonhomologous end joining	2.28E-03
46	GO:2000031: regulation of salicylic acid mediated signaling pathway	2.28E-03
47	GO:0060321: acceptance of pollen	2.28E-03
48	GO:0009808: lignin metabolic process	2.28E-03
49	GO:0006897: endocytosis	2.36E-03
50	GO:0006887: exocytosis	2.36E-03
51	GO:0051707: response to other organism	2.56E-03
52	GO:0000209: protein polyubiquitination	2.66E-03
53	GO:0000723: telomere maintenance	2.88E-03
54	GO:0048354: mucilage biosynthetic process involved in seed coat development	2.88E-03
55	GO:0071577: zinc II ion transmembrane transport	2.88E-03
56	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.08E-03
57	GO:0009641: shade avoidance	3.20E-03
58	GO:0009684: indoleacetic acid biosynthetic process	3.53E-03
59	GO:0009682: induced systemic resistance	3.53E-03
60	GO:0052544: defense response by callose deposition in cell wall	3.53E-03
61	GO:0009073: aromatic amino acid family biosynthetic process	3.53E-03
62	GO:0030148: sphingolipid biosynthetic process	3.53E-03
63	GO:0000266: mitochondrial fission	3.87E-03
64	GO:0030048: actin filament-based movement	4.23E-03
65	GO:0055046: microgametogenesis	4.23E-03
66	GO:0009620: response to fungus	4.44E-03
67	GO:0048467: gynoecium development	4.59E-03
68	GO:0009969: xyloglucan biosynthetic process	4.96E-03
69	GO:0080188: RNA-directed DNA methylation	4.96E-03
70	GO:0010030: positive regulation of seed germination	4.96E-03
71	GO:0070588: calcium ion transmembrane transport	4.96E-03
72	GO:0009742: brassinosteroid mediated signaling pathway	5.15E-03
73	GO:2000022: regulation of jasmonic acid mediated signaling pathway	6.99E-03
74	GO:0030433: ubiquitin-dependent ERAD pathway	6.99E-03
75	GO:0006012: galactose metabolic process	7.42E-03
76	GO:0009561: megagametogenesis	7.87E-03
77	GO:0042127: regulation of cell proliferation	7.87E-03
78	GO:0050832: defense response to fungus	8.59E-03
79	GO:0006885: regulation of pH	9.26E-03
80	GO:0010182: sugar mediated signaling pathway	9.26E-03
81	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	9.39E-03
82	GO:0007166: cell surface receptor signaling pathway	9.60E-03
83	GO:0061025: membrane fusion	9.74E-03
84	GO:0009749: response to glucose	1.02E-02
85	GO:0019252: starch biosynthetic process	1.02E-02
86	GO:0002229: defense response to oomycetes	1.07E-02
87	GO:0007264: small GTPase mediated signal transduction	1.12E-02
88	GO:0016032: viral process	1.12E-02
89	GO:0010090: trichome morphogenesis	1.18E-02
90	GO:0006310: DNA recombination	1.23E-02
91	GO:0055085: transmembrane transport	1.24E-02
92	GO:0009627: systemic acquired resistance	1.51E-02
93	GO:0016049: cell growth	1.62E-02
94	GO:0007165: signal transduction	1.66E-02
95	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.67E-02
96	GO:0009817: defense response to fungus, incompatible interaction	1.68E-02
97	GO:0008219: cell death	1.68E-02
98	GO:0016192: vesicle-mediated transport	1.70E-02
99	GO:0046777: protein autophosphorylation	1.73E-02
100	GO:0048767: root hair elongation	1.74E-02
101	GO:0009813: flavonoid biosynthetic process	1.74E-02
102	GO:0006499: N-terminal protein myristoylation	1.80E-02
103	GO:0009867: jasmonic acid mediated signaling pathway	1.99E-02
104	GO:0016051: carbohydrate biosynthetic process	1.99E-02
105	GO:0006886: intracellular protein transport	2.00E-02
106	GO:0016310: phosphorylation	2.12E-02
107	GO:0030001: metal ion transport	2.18E-02
108	GO:0010114: response to red light	2.38E-02
109	GO:0006952: defense response	2.51E-02
110	GO:0009846: pollen germination	2.80E-02
111	GO:0006812: cation transport	2.80E-02
112	GO:0009809: lignin biosynthetic process	2.94E-02
113	GO:0006486: protein glycosylation	2.94E-02
114	GO:0006813: potassium ion transport	2.94E-02
115	GO:0051603: proteolysis involved in cellular protein catabolic process	3.02E-02
116	GO:0010224: response to UV-B	3.02E-02
117	GO:0006810: transport	3.62E-02
118	GO:0016569: covalent chromatin modification	3.63E-02
119	GO:0018105: peptidyl-serine phosphorylation	3.86E-02
120	GO:0051726: regulation of cell cycle	3.94E-02
121	GO:0009738: abscisic acid-activated signaling pathway	4.09E-02
122	GO:0009611: response to wounding	4.32E-02

Rank	GO Term	Adjusted P value
1	GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity	0.00E+00
2	GO:0033746: histone demethylase activity (H3-R2 specific)	0.00E+00
3	GO:0033749: histone demethylase activity (H4-R3 specific)	0.00E+00
4	GO:0016603: glutaminyl-peptide cyclotransferase activity	0.00E+00
5	GO:0005524: ATP binding	1.19E-05
6	GO:0016301: kinase activity	1.45E-05
7	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.08E-04
8	GO:1901149: salicylic acid binding	1.08E-04
9	GO:0015085: calcium ion transmembrane transporter activity	1.08E-04
10	GO:0034450: ubiquitin-ubiquitin ligase activity	1.08E-04
11	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	1.08E-04
12	GO:0004713: protein tyrosine kinase activity	1.44E-04
13	GO:0004674: protein serine/threonine kinase activity	1.77E-04
14	GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity	2.52E-04
15	GO:0030742: GTP-dependent protein binding	2.52E-04
16	GO:0045140: inositol phosphoceramide synthase activity	2.52E-04
17	GO:0004383: guanylate cyclase activity	4.19E-04
18	GO:0004449: isocitrate dehydrogenase (NAD+) activity	6.01E-04
19	GO:0004834: tryptophan synthase activity	7.98E-04
20	GO:0004930: G-protein coupled receptor activity	7.98E-04
21	GO:0045431: flavonol synthase activity	1.01E-03
22	GO:0015301: anion:anion antiporter activity	1.01E-03
23	GO:0005452: inorganic anion exchanger activity	1.01E-03
24	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	1.01E-03
25	GO:0017137: Rab GTPase binding	1.01E-03
26	GO:0004040: amidase activity	1.01E-03
27	GO:0004012: phospholipid-translocating ATPase activity	1.47E-03
28	GO:0004747: ribokinase activity	1.47E-03
29	GO:0042162: telomeric DNA binding	1.73E-03
30	GO:0008143: poly(A) binding	1.73E-03
31	GO:0004034: aldose 1-epimerase activity	2.00E-03
32	GO:0008865: fructokinase activity	2.00E-03
33	GO:0052747: sinapyl alcohol dehydrogenase activity	2.00E-03
34	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.00E-03
35	GO:0004630: phospholipase D activity	2.28E-03
36	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	2.28E-03
37	GO:0004672: protein kinase activity	2.51E-03
38	GO:0008417: fucosyltransferase activity	2.57E-03
39	GO:0004003: ATP-dependent DNA helicase activity	2.57E-03
40	GO:0045551: cinnamyl-alcohol dehydrogenase activity	3.87E-03
41	GO:0005388: calcium-transporting ATPase activity	4.23E-03
42	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	4.23E-03
43	GO:0003774: motor activity	4.59E-03
44	GO:0005515: protein binding	4.61E-03
45	GO:0005509: calcium ion binding	4.85E-03
46	GO:0004725: protein tyrosine phosphatase activity	5.35E-03
47	GO:0005385: zinc ion transmembrane transporter activity	5.75E-03
48	GO:0043130: ubiquitin binding	5.75E-03
49	GO:0033612: receptor serine/threonine kinase binding	6.56E-03
50	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	7.82E-03
51	GO:0005451: monovalent cation:proton antiporter activity	8.79E-03
52	GO:0008536: Ran GTPase binding	9.26E-03
53	GO:0046873: metal ion transmembrane transporter activity	9.26E-03
54	GO:0016853: isomerase activity	9.74E-03
55	GO:0015299: solute:proton antiporter activity	9.74E-03
56	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.07E-02
57	GO:0015385: sodium:proton antiporter activity	1.18E-02
58	GO:0003684: damaged DNA binding	1.23E-02
59	GO:0008270: zinc ion binding	1.28E-02
60	GO:0030246: carbohydrate binding	1.34E-02
61	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.51E-02
62	GO:0005516: calmodulin binding	1.54E-02
63	GO:0030247: polysaccharide binding	1.56E-02
64	GO:0004683: calmodulin-dependent protein kinase activity	1.56E-02
65	GO:0005096: GTPase activator activity	1.74E-02
66	GO:0000987: core promoter proximal region sequence-specific DNA binding	2.05E-02
67	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.12E-02
68	GO:0008422: beta-glucosidase activity	2.12E-02
69	GO:0005484: SNAP receptor activity	2.38E-02
70	GO:0035091: phosphatidylinositol binding	2.52E-02
71	GO:0005198: structural molecule activity	2.59E-02
72	GO:0003690: double-stranded DNA binding	3.02E-02
73	GO:0031625: ubiquitin protein ligase binding	3.17E-02
74	GO:0008234: cysteine-type peptidase activity	3.17E-02
75	GO:0003779: actin binding	3.70E-02
76	GO:0016746: transferase activity, transferring acyl groups	3.86E-02
77	GO:0004386: helicase activity	4.02E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	3.74E-09
2	GO:0043564: Ku70:Ku80 complex	1.08E-04
3	GO:0045252: oxoglutarate dehydrogenase complex	1.08E-04
4	GO:0030130: clathrin coat of trans-Golgi network vesicle	4.19E-04
5	GO:0030132: clathrin coat of coated pit	4.19E-04
6	GO:0016021: integral component of membrane	5.49E-04
7	GO:0070062: extracellular exosome	6.01E-04
8	GO:0000145: exocyst	9.14E-04
9	GO:0030131: clathrin adaptor complex	2.00E-03
10	GO:0000784: nuclear chromosome, telomeric region	2.28E-03
11	GO:0010494: cytoplasmic stress granule	2.57E-03
12	GO:0005789: endoplasmic reticulum membrane	2.69E-03
13	GO:0030125: clathrin vesicle coat	3.20E-03
14	GO:0016459: myosin complex	3.20E-03
15	GO:0048471: perinuclear region of cytoplasm	3.53E-03
16	GO:0010008: endosome membrane	4.18E-03
17	GO:0043234: protein complex	5.35E-03
18	GO:0009524: phragmoplast	6.41E-03
19	GO:0005905: clathrin-coated pit	6.56E-03
20	GO:0009504: cell plate	1.02E-02
21	GO:0032580: Golgi cisterna membrane	1.23E-02
22	GO:0005783: endoplasmic reticulum	1.33E-02
23	GO:0005794: Golgi apparatus	1.37E-02
24	GO:0019005: SCF ubiquitin ligase complex	1.68E-02
25	GO:0000151: ubiquitin ligase complex	1.68E-02
26	GO:0000325: plant-type vacuole	1.86E-02
27	GO:0031902: late endosome membrane	2.25E-02
28	GO:0005829: cytosol	2.32E-02
29	GO:0005773: vacuole	2.33E-02
30	GO:0005856: cytoskeleton	2.59E-02
31	GO:0009505: plant-type cell wall	2.98E-02
32	GO:0005774: vacuolar membrane	3.52E-02
33	GO:0009506: plasmodesma	4.37E-02