Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G23520

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006903: vesicle targeting0.00E+00
2GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase0.00E+00
3GO:2001253: regulation of histone H3-K36 trimethylation0.00E+00
4GO:0010793: regulation of mRNA export from nucleus0.00E+00
5GO:0000188: inactivation of MAPK activity0.00E+00
6GO:0006182: cGMP biosynthetic process0.00E+00
7GO:0006468: protein phosphorylation8.49E-06
8GO:0000162: tryptophan biosynthetic process9.59E-06
9GO:0010044: response to aluminum ion4.92E-05
10GO:0048482: plant ovule morphogenesis1.08E-04
11GO:0043547: positive regulation of GTPase activity1.08E-04
12GO:0043985: histone H4-R3 methylation1.08E-04
13GO:0006643: membrane lipid metabolic process1.08E-04
14GO:0009968: negative regulation of signal transduction1.08E-04
15GO:0080185: effector dependent induction by symbiont of host immune response2.52E-04
16GO:0050684: regulation of mRNA processing2.52E-04
17GO:0051645: Golgi localization2.52E-04
18GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine2.52E-04
19GO:0060151: peroxisome localization2.52E-04
20GO:0051646: mitochondrion localization4.19E-04
21GO:0032784: regulation of DNA-templated transcription, elongation4.19E-04
22GO:0090436: leaf pavement cell development4.19E-04
23GO:0046621: negative regulation of organ growth4.19E-04
24GO:0006612: protein targeting to membrane6.01E-04
25GO:0006893: Golgi to plasma membrane transport6.01E-04
26GO:0006882: cellular zinc ion homeostasis6.01E-04
27GO:0048830: adventitious root development7.98E-04
28GO:0010225: response to UV-C1.01E-03
29GO:0006904: vesicle docking involved in exocytosis1.09E-03
30GO:0048317: seed morphogenesis1.23E-03
31GO:0006014: D-ribose metabolic process1.23E-03
32GO:0009759: indole glucosinolate biosynthetic process1.23E-03
33GO:0042742: defense response to bacterium1.28E-03
34GO:0009816: defense response to bacterium, incompatible interaction1.29E-03
35GO:0000911: cytokinesis by cell plate formation1.47E-03
36GO:0009423: chorismate biosynthetic process1.47E-03
37GO:0009612: response to mechanical stimulus1.47E-03
38GO:0009617: response to bacterium1.49E-03
39GO:0046470: phosphatidylcholine metabolic process1.73E-03
40GO:0030162: regulation of proteolysis2.00E-03
41GO:0006875: cellular metal ion homeostasis2.00E-03
42GO:0032875: regulation of DNA endoreduplication2.00E-03
43GO:0006102: isocitrate metabolic process2.00E-03
44GO:0006099: tricarboxylic acid cycle2.08E-03
45GO:0006303: double-strand break repair via nonhomologous end joining2.28E-03
46GO:2000031: regulation of salicylic acid mediated signaling pathway2.28E-03
47GO:0060321: acceptance of pollen2.28E-03
48GO:0009808: lignin metabolic process2.28E-03
49GO:0006897: endocytosis2.36E-03
50GO:0006887: exocytosis2.36E-03
51GO:0051707: response to other organism2.56E-03
52GO:0000209: protein polyubiquitination2.66E-03
53GO:0000723: telomere maintenance2.88E-03
54GO:0048354: mucilage biosynthetic process involved in seed coat development2.88E-03
55GO:0071577: zinc II ion transmembrane transport2.88E-03
56GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process3.08E-03
57GO:0009641: shade avoidance3.20E-03
58GO:0009684: indoleacetic acid biosynthetic process3.53E-03
59GO:0009682: induced systemic resistance3.53E-03
60GO:0052544: defense response by callose deposition in cell wall3.53E-03
61GO:0009073: aromatic amino acid family biosynthetic process3.53E-03
62GO:0030148: sphingolipid biosynthetic process3.53E-03
63GO:0000266: mitochondrial fission3.87E-03
64GO:0030048: actin filament-based movement4.23E-03
65GO:0055046: microgametogenesis4.23E-03
66GO:0009620: response to fungus4.44E-03
67GO:0048467: gynoecium development4.59E-03
68GO:0009969: xyloglucan biosynthetic process4.96E-03
69GO:0080188: RNA-directed DNA methylation4.96E-03
70GO:0010030: positive regulation of seed germination4.96E-03
71GO:0070588: calcium ion transmembrane transport4.96E-03
72GO:0009742: brassinosteroid mediated signaling pathway5.15E-03
73GO:2000022: regulation of jasmonic acid mediated signaling pathway6.99E-03
74GO:0030433: ubiquitin-dependent ERAD pathway6.99E-03
75GO:0006012: galactose metabolic process7.42E-03
76GO:0009561: megagametogenesis7.87E-03
77GO:0042127: regulation of cell proliferation7.87E-03
78GO:0050832: defense response to fungus8.59E-03
79GO:0006885: regulation of pH9.26E-03
80GO:0010182: sugar mediated signaling pathway9.26E-03
81GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process9.39E-03
82GO:0007166: cell surface receptor signaling pathway9.60E-03
83GO:0061025: membrane fusion9.74E-03
84GO:0009749: response to glucose1.02E-02
85GO:0019252: starch biosynthetic process1.02E-02
86GO:0002229: defense response to oomycetes1.07E-02
87GO:0007264: small GTPase mediated signal transduction1.12E-02
88GO:0016032: viral process1.12E-02
89GO:0010090: trichome morphogenesis1.18E-02
90GO:0006310: DNA recombination1.23E-02
91GO:0055085: transmembrane transport1.24E-02
92GO:0009627: systemic acquired resistance1.51E-02
93GO:0016049: cell growth1.62E-02
94GO:0007165: signal transduction1.66E-02
95GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.67E-02
96GO:0009817: defense response to fungus, incompatible interaction1.68E-02
97GO:0008219: cell death1.68E-02
98GO:0016192: vesicle-mediated transport1.70E-02
99GO:0046777: protein autophosphorylation1.73E-02
100GO:0048767: root hair elongation1.74E-02
101GO:0009813: flavonoid biosynthetic process1.74E-02
102GO:0006499: N-terminal protein myristoylation1.80E-02
103GO:0009867: jasmonic acid mediated signaling pathway1.99E-02
104GO:0016051: carbohydrate biosynthetic process1.99E-02
105GO:0006886: intracellular protein transport2.00E-02
106GO:0016310: phosphorylation2.12E-02
107GO:0030001: metal ion transport2.18E-02
108GO:0010114: response to red light2.38E-02
109GO:0006952: defense response2.51E-02
110GO:0009846: pollen germination2.80E-02
111GO:0006812: cation transport2.80E-02
112GO:0009809: lignin biosynthetic process2.94E-02
113GO:0006486: protein glycosylation2.94E-02
114GO:0006813: potassium ion transport2.94E-02
115GO:0051603: proteolysis involved in cellular protein catabolic process3.02E-02
116GO:0010224: response to UV-B3.02E-02
117GO:0006810: transport3.62E-02
118GO:0016569: covalent chromatin modification3.63E-02
119GO:0018105: peptidyl-serine phosphorylation3.86E-02
120GO:0051726: regulation of cell cycle3.94E-02
121GO:0009738: abscisic acid-activated signaling pathway4.09E-02
122GO:0009611: response to wounding4.32E-02
RankGO TermAdjusted P value
1GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity0.00E+00
2GO:0033746: histone demethylase activity (H3-R2 specific)0.00E+00
3GO:0033749: histone demethylase activity (H4-R3 specific)0.00E+00
4GO:0016603: glutaminyl-peptide cyclotransferase activity0.00E+00
5GO:0005524: ATP binding1.19E-05
6GO:0016301: kinase activity1.45E-05
7GO:0004425: indole-3-glycerol-phosphate synthase activity1.08E-04
8GO:1901149: salicylic acid binding1.08E-04
9GO:0015085: calcium ion transmembrane transporter activity1.08E-04
10GO:0034450: ubiquitin-ubiquitin ligase activity1.08E-04
11GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity1.08E-04
12GO:0004713: protein tyrosine kinase activity1.44E-04
13GO:0004674: protein serine/threonine kinase activity1.77E-04
14GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity2.52E-04
15GO:0030742: GTP-dependent protein binding2.52E-04
16GO:0045140: inositol phosphoceramide synthase activity2.52E-04
17GO:0004383: guanylate cyclase activity4.19E-04
18GO:0004449: isocitrate dehydrogenase (NAD+) activity6.01E-04
19GO:0004834: tryptophan synthase activity7.98E-04
20GO:0004930: G-protein coupled receptor activity7.98E-04
21GO:0045431: flavonol synthase activity1.01E-03
22GO:0015301: anion:anion antiporter activity1.01E-03
23GO:0005452: inorganic anion exchanger activity1.01E-03
24GO:0005546: phosphatidylinositol-4,5-bisphosphate binding1.01E-03
25GO:0017137: Rab GTPase binding1.01E-03
26GO:0004040: amidase activity1.01E-03
27GO:0004012: phospholipid-translocating ATPase activity1.47E-03
28GO:0004747: ribokinase activity1.47E-03
29GO:0042162: telomeric DNA binding1.73E-03
30GO:0008143: poly(A) binding1.73E-03
31GO:0004034: aldose 1-epimerase activity2.00E-03
32GO:0008865: fructokinase activity2.00E-03
33GO:0052747: sinapyl alcohol dehydrogenase activity2.00E-03
34GO:0004714: transmembrane receptor protein tyrosine kinase activity2.00E-03
35GO:0004630: phospholipase D activity2.28E-03
36GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity2.28E-03
37GO:0004672: protein kinase activity2.51E-03
38GO:0008417: fucosyltransferase activity2.57E-03
39GO:0004003: ATP-dependent DNA helicase activity2.57E-03
40GO:0045551: cinnamyl-alcohol dehydrogenase activity3.87E-03
41GO:0005388: calcium-transporting ATPase activity4.23E-03
42GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism4.23E-03
43GO:0003774: motor activity4.59E-03
44GO:0005515: protein binding4.61E-03
45GO:0005509: calcium ion binding4.85E-03
46GO:0004725: protein tyrosine phosphatase activity5.35E-03
47GO:0005385: zinc ion transmembrane transporter activity5.75E-03
48GO:0043130: ubiquitin binding5.75E-03
49GO:0033612: receptor serine/threonine kinase binding6.56E-03
50GO:0004675: transmembrane receptor protein serine/threonine kinase activity7.82E-03
51GO:0005451: monovalent cation:proton antiporter activity8.79E-03
52GO:0008536: Ran GTPase binding9.26E-03
53GO:0046873: metal ion transmembrane transporter activity9.26E-03
54GO:0016853: isomerase activity9.74E-03
55GO:0015299: solute:proton antiporter activity9.74E-03
56GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.07E-02
57GO:0015385: sodium:proton antiporter activity1.18E-02
58GO:0003684: damaged DNA binding1.23E-02
59GO:0008270: zinc ion binding1.28E-02
60GO:0030246: carbohydrate binding1.34E-02
61GO:0009931: calcium-dependent protein serine/threonine kinase activity1.51E-02
62GO:0005516: calmodulin binding1.54E-02
63GO:0030247: polysaccharide binding1.56E-02
64GO:0004683: calmodulin-dependent protein kinase activity1.56E-02
65GO:0005096: GTPase activator activity1.74E-02
66GO:0000987: core promoter proximal region sequence-specific DNA binding2.05E-02
67GO:0004712: protein serine/threonine/tyrosine kinase activity2.12E-02
68GO:0008422: beta-glucosidase activity2.12E-02
69GO:0005484: SNAP receptor activity2.38E-02
70GO:0035091: phosphatidylinositol binding2.52E-02
71GO:0005198: structural molecule activity2.59E-02
72GO:0003690: double-stranded DNA binding3.02E-02
73GO:0031625: ubiquitin protein ligase binding3.17E-02
74GO:0008234: cysteine-type peptidase activity3.17E-02
75GO:0003779: actin binding3.70E-02
76GO:0016746: transferase activity, transferring acyl groups3.86E-02
77GO:0004386: helicase activity4.02E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane3.74E-09
2GO:0043564: Ku70:Ku80 complex1.08E-04
3GO:0045252: oxoglutarate dehydrogenase complex1.08E-04
4GO:0030130: clathrin coat of trans-Golgi network vesicle4.19E-04
5GO:0030132: clathrin coat of coated pit4.19E-04
6GO:0016021: integral component of membrane5.49E-04
7GO:0070062: extracellular exosome6.01E-04
8GO:0000145: exocyst9.14E-04
9GO:0030131: clathrin adaptor complex2.00E-03
10GO:0000784: nuclear chromosome, telomeric region2.28E-03
11GO:0010494: cytoplasmic stress granule2.57E-03
12GO:0005789: endoplasmic reticulum membrane2.69E-03
13GO:0030125: clathrin vesicle coat3.20E-03
14GO:0016459: myosin complex3.20E-03
15GO:0048471: perinuclear region of cytoplasm3.53E-03
16GO:0010008: endosome membrane4.18E-03
17GO:0043234: protein complex5.35E-03
18GO:0009524: phragmoplast6.41E-03
19GO:0005905: clathrin-coated pit6.56E-03
20GO:0009504: cell plate1.02E-02
21GO:0032580: Golgi cisterna membrane1.23E-02
22GO:0005783: endoplasmic reticulum1.33E-02
23GO:0005794: Golgi apparatus1.37E-02
24GO:0019005: SCF ubiquitin ligase complex1.68E-02
25GO:0000151: ubiquitin ligase complex1.68E-02
26GO:0000325: plant-type vacuole1.86E-02
27GO:0031902: late endosome membrane2.25E-02
28GO:0005829: cytosol2.32E-02
29GO:0005773: vacuole2.33E-02
30GO:0005856: cytoskeleton2.59E-02
31GO:0009505: plant-type cell wall2.98E-02
32GO:0005774: vacuolar membrane3.52E-02
33GO:0009506: plasmodesma4.37E-02
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Gene type



Gene DE type