gene detail

Gene description

TAIR ID: AT5G20830

Short description: sucrose synthase 1

Pathogen responsiveness: -0.44

General responsiveness: 1.93

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

response to mannitol, response to osmotic stress, response to cold, response to water deprivation, positive regulation of transcription, DNA-templated, response to hypoxia, sucrose biosynthetic process, response to sucrose, mRNA export from nucleus, response to sorbitol, response to flooding, response to cadmium ion, sucrose metabolic process, response to glucose

GO cellular component

plasmodesma, nuclear pore, integral component of membrane, cytosol, SAGA complex

GO molecular function

UDP-glycosyltransferase activity, sucrose synthase activity, transcription coactivator activity

Protein domain

Pfam	PF00862, Sucrose synthase
Pfam	PF00534, Glycosyl transferases group 1

Metabolic pathway

PWY-3801: sucrose degradation II (sucrose synthase)

KEGG pathway

PATH:ath00500: Starch and sucrose metabolism

Transcriptional regulation

Regulator:
AT3G16857, AT4G16110, AT1G45249, AT1G24260, AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 3

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

17 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, Alternaria brassicicola 3 d	-1.53	4.11E-08
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	1.55	2.64E-03
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	1.89	4.21E-04
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	2.23	1.41E-04
GSE18329	Col, wrky72_1, control	Col, wrky72_1, Hpa noco2 96 h	2.19	9.79E-13
GSE18329	Col, wrky72_1, control	Col, wrky72_2, Hpa noco2 96 h	2.06	2.62E-12
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	2.62	6.35E-07
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	1.61	8.70E-03
GSE50526	Col, WT, mock 9 h	Col, WT, A. brassicicola 9 h	1.67	2.96E-03
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	2.16	1.65E-03
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	2.11	9.77E-07
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	1.63	1.75E-04
GSE56094	Col, WT, control 11 h	Col, WT, hrpA- 11 h	1.66	2.42E-04
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	2.58	6.09E-09
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	2.67	1.47E-09
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	1.75	6.76E-05
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	3.12	7.48E-06