gene detail

Gene description

TAIR ID: AT5G18100

Short description: copper/zinc superoxide dismutase 3

Pathogen responsiveness: -1.00

General responsiveness: -1.30

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

cellular response to UV-B, oxidation-reduction process, removal of superoxide radicals, cellular response to salt stress, cellular response to light intensity, cellular response to high light intensity, response to oxidative stress, cellular response to ozone

GO cellular component

peroxisome, chloroplast, extracellular space, vacuole

GO molecular function

zinc ion binding, superoxide dismutase activity, copper ion binding

Protein domain

Pfam	PF00080, Copper/zinc superoxide dismutase (SODC)

Metabolic pathway

DETOX1-PWY: superoxide radicals degradation

KEGG pathway

PATH:ath04146: Peroxisome

Transcriptional regulation

Regulator:
AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

7 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-1.77	8.81E-09
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.54	9.38E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.60	1.87E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-2.01	8.13E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-2.05	4.98E-13
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.84	3.68E-04
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.65	1.51E-04