gene detail

Gene description

TAIR ID: AT5G17490

Short description: RGA-like protein 3

Pathogen responsiveness: -0.46

General responsiveness: -1.19

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

regulation of reactive oxygen species metabolic process, jasmonic acid mediated signaling pathway, negative regulation of seed germination, gibberellic acid mediated signaling pathway, salicylic acid mediated signaling pathway, hyperosmotic salinity response, response to gibberellin, regulation of transcription, DNA-templated, transcription, regulation of seed dormancy process, negative regulation of gibberellic acid mediated signaling pathway, multicellular organism development, response to abscisic acid, response to ethylene

GO cellular component

nucleus

GO molecular function

protein binding, sequence-specific DNA binding, transcription factor activity

Protein domain

Pfam	PF03514, GRAS domain family
Pfam	PF12041, Transcriptional regulator DELLA protein N terminal
SMART	SM01129, DELLA

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath04075: Plant hormone signal transduction

Transcriptional regulation

Regulator:
AT4G25480, AT4G25490, AT1G12610, AT5G13790, AT5G61850, AT4G25470

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 26 (Top10%)

click to view PPI network

Coexpression network

GSE56094_WT_HRPA- view

Differentially expressed condition

12 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Penta, control	Penta, Alternaria brassicicola 3 d	-1.77	1.29E-02
GSE20278	Col, RPL18-HF, control, polysomal RNA	Col, RPL18-HF, TuMV 10 d, polysomal RNA	-1.51	2.44E-02
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a C216aA 6 h	1.71	6.46E-05
GSE21920	Col, WT, mock	Col, WT, Pto 6 h	1.69	4.85E-04
GSE21920	Col, ulp1, mock	Col, ulp1, Pto 6 h	2.39	3.56E-06
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-3.32	1.56E-05
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.67	1.57E-02
GSE37269	Wt1, WT, control	Wt1, WT, TEV 21 d	-1.91	2.55E-02
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 EV	2.79	1.05E-02
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	4.11	1.20E-11
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	4.01	5.60E-13
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	1.89	3.71E-10