gene detail

Gene description

TAIR ID: AT5G15170

Short description: tyrosyl-DNA phosphodiesterase-related

Pathogen responsiveness: -1.50

General responsiveness: -2.54

Orthologous

Rice: No orthologous gene

Maize:

Wheat: No orthologous gene

GO biological process

double-strand break repair, single strand break repair, DNA repair

GO cellular component

nucleus

GO molecular function

single-stranded DNA binding, double-stranded DNA binding, 3'-tyrosyl-DNA phosphodiesterase activity, exonuclease activity

Protein domain

Pfam	PF06087, Tyrosyl-DNA phosphodiesterase

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

Coexpression network

Differentially expressed condition

5 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.79	3.06E-03
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-1.51	5.91E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.95	1.32E-13
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-1.64	1.78E-12
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-1.66	3.87E-03