gene detail

Gene description

TAIR ID: AT5G13650

Short description: elongation factor family protein

Pathogen responsiveness: -0.56

General responsiveness: 1.26

Orthologous

Rice: No orthologous gene

Maize:

Wheat: No orthologous gene

GO biological process

regulation of gene expression, response to reactive oxygen species, chloroplast RNA processing

GO cellular component

chloroplast stroma, chloroplast, plasma membrane

GO molecular function

translation elongation factor activity

Protein domain

Pfam	PF03144, Elongation factor Tu domain 2
Pfam	PF00009, Elongation factor Tu GTP binding domain
Pfam	PF00679, Elongation factor G C-terminus
SMART	SM00838, EFG_C

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT3G16857, AT4G16110

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 2

Coexpression network

Differentially expressed condition

11 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.72	1.21E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.48	5.59E-11
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.84	9.40E-04
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.64	1.99E-10
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-1.98	1.79E-14
GSE56094	Col, WT, control 10 h	Col, WT, hrpA- 10 h	-1.60	2.25E-09
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-1.62	1.42E-10
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.53	9.11E-10
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-1.53	5.65E-10
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h	-1.94	7.47E-04
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	-1.61	2.83E-03