gene detail

Gene description

TAIR ID: AT5G06860

Short description: polygalacturonase inhibiting protein 1

Pathogen responsiveness: 0.95

General responsiveness: 2.28

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G025105

Wheat: No orthologous gene

GO biological process

defense response, signal transduction

GO cellular component

plasmodesma, extracellular region, Golgi apparatus, membrane, plant-type cell wall, cell wall

GO molecular function

polygalacturonase inhibitor activity

Protein domain

Pfam	PF08263, Leucine rich repeat N-terminal domain
Pfam	PF00560, Leucine Rich Repeat

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT1G24260, AT5G61850

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

40 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, WT, control	Col, WT, Bg h	2.32	1.22E-06
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	2.44	5.31E-07
GSE17464	Laer, control	Laer, Alternaria brassicicola 3 d	-1.97	5.26E-04
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	2.53	6.24E-06
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	3.04	6.35E-07
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	2.38	7.51E-06
GSE18329	Col, WT, control	Col, WT, Hpa noco2 96 h	1.81	9.51E-13
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	2.67	1.28E-11
GSE37269	Wt1, WT, control	Wt1, WT, TEV 21 d	-1.78	1.34E-02
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	2.02	1.60E-04
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	2.54	1.34E-05
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	1.77	5.49E-04
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 EV	2.06	3.63E-04
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	3.02	3.68E-13
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	2.34	5.87E-11
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	2.62	4.10E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	3.51	5.13E-14
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	3.07	4.15E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	3.30	1.01E-13
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	2.15	8.17E-14
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	2.38	5.43E-14
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	2.93	7.62E-16
GSE45214	Col, npr1, PstDC3000 AvrRpt2 0 h	Col, npr1, PstDC3000 AvrRpt2 4 h	1.86	8.40E-13
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	5.56	2.89E-06
GSE50526	Col, WT, mock 9 h	Col, WT, A. brassicicola 9 h	3.65	9.84E-05
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	1.65	8.05E-06
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	1.86	5.92E-05
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	1.81	2.11E-04
GSE56094	Col, WT, control 10 h	Col, WT, hrpA- 10 h	1.56	1.21E-08
GSE56094	Col, WT, control 11 h	Col, WT, hrpA- 11 h	1.63	1.86E-09
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	1.54	1.84E-09
GSE56094	Col, WT, control 7 h	Col, WT, hrpA- 7 h	1.62	9.96E-09
GSE5615	Col, WT, water 4 h	Col, WT, Flg22 4 h	2.30	2.66E-10
GSE5615	Col, WT, water 4 h	Col, WT, HrpZ 4 h	2.22	3.09E-10
GSE5616	Col, WT, water 12 h	Col, WT, P. infestans 12 h	1.75	6.50E-06
GSE5616	Col, WT, water 6 h	Col, WT, P. infestans 6 h	2.42	7.59E-08
GSE62537	Col, WT, control 48 h	Col, WT, V.longisporum 48 h	2.41	3.93E-03
GSE62537	Col, ndr1, control 48 h	Col, ndr1, V.longisporum 48 h	1.85	1.38E-02
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	1.82	1.50E-04
GSE9674	Ws-4, AtMYB30 ox, control	Ws-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h	1.72	3.51E-02